HHsearch results for GI: 254780288 and protein with PDBid: 3ngq_A
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=99.97 E-value=1.8e-30 Score=189.39 Aligned_cols=259 Identities=18% Similarity=0.165 Sum_probs=129.8
Q ss_pred CCEEEEEEE--C----------------CHHHHHHHHHHHHHHHCCCEEEEEEEECCH-HHCCHHHHHHCCCEEEEEEC-
Q ss_conf 007998710--3----------------188889989999987289889998565794-45897787328978999304-
Q gi|254780288|r 3 VVTVATWNV--N----------------SIRARIHNLAAWIKENNPDIICLQETKTED-KNFPFETLQSLNYHIETCGQ- 62 (281)
Q Consensus 3 ~lrI~TwNi--n----------------glr~r~~~l~~~l~~~~pDIi~LQEvk~~~-~~~~~~~~~~~gy~~~~~~~- 62 (281)
.+||||||| + .+..|.+.+.+.|.+.+|||||||||.... .++....+...||+..+...
T Consensus 31 ~lrV~SyNVL~~~~~~~~~~~~~~~~~l~~~~R~~~I~~~I~~~~pDII~LQEV~~~~~~~~l~~~l~~~g~~~~~~~~~ 110 (398)
T 3ngq_A 31 SFTVMCYNVLCDKYATRQLYGYCPSWALNWEYRKKGIMEEIVNCDADIISLQEVETEQYFTLFLPALKERGYDGFFSPKS 110 (398)
T ss_dssp EEEEEEEECCCGGGCCTTTCTTSCHHHHSHHHHHHHHHHHHHHHCCSEEEEEEEEHHHHHHTHHHHHHHTTEEEEEEESC
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 18999668576556773336899816649999999999999866998899974765323699999998629835876246
Q ss_pred ----------CCCCCEEEEE---EECCEEEEEC-CCC------CCCC----------C-----------C--CCEECCCC
Q ss_conf ----------7765148987---4031378632-555------6443----------2-----------3--30101100
Q gi|254780288|r 63 ----------KSYNGVAILS---KYQPIEIVTH-LPG------DDLD----------V-----------Q--ARFIEATF 99 (281)
Q Consensus 63 ----------k~~~GvaIls---k~~~~~v~~~-~~~------~~~d----------~-----------~--~R~i~~~i 99 (281)
++..||||++ |+++++.... +.. ...+ . . ...+....
T Consensus 111 ~~~~~~~~~~~~~~gvai~~~~sr~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (398)
T 3ngq_A 111 RAKIMSEQERKHVDGCAIFFKTEKFTLVQKHTVEFNQVAMANSDGSEAMLNRVMTKDNIGVAVVLEVHKELFGAGMKPIH 190 (398)
T ss_dssp TTSCCCHHHHHTCEEEEEEEETTTEEEEEEEEEEHHHHHHHTCTTCHHHHHTTTTCCCEEEEEEEEECGGGC--------
T ss_pred CCCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEECCCCCCCCCCCCCHHHCCCCCCCCCEEEEEEECCCCCCCCCEEEEC
T ss_conf 76544567776663079998667662566778861676666665530011010013321035664113542221022101
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHH-------------CCCCHHHHHHHCCCCCCCCCCHHH
Q ss_conf 0232079996310466785443101236777765533222320-------------147600001101468674200001
Q gi|254780288|r 100 TINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRL-------------ELEEPLIFAGDYNIIPQPHDCYNP 166 (281)
Q Consensus 100 ~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~-------------~~~~~vIi~GDFN~a~~~~D~~~~ 166 (281)
...+..+.|+|+|++...... +.+..+...+...+.... ....++|+|||||..+.+. ....
T Consensus 191 ~~~~~~~~v~ntHL~~~~~~~----~~r~~q~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~GDfN~~~~~~-~~~~ 265 (398)
T 3ngq_A 191 AADKQLLIVANAHMHWDPEYS----DVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDSG-VVEY 265 (398)
T ss_dssp ---CCEEEEEEEECCCCTTCH----HHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTSH-HHHH
T ss_pred CCCCCEEEEEEECCCCCCCCH----HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCH-HHHH
T ss_conf 578856999996655566530----78999999999999999987665320123445687448714546787647-8999
Q ss_pred HHCCC-CCCCCHHHH----HHHHHC--------CCC------CHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEE
Q ss_conf 21048-734463455----653210--------331------00000013378887200357876752557771356999
Q gi|254780288|r 167 IIWEN-DACFTLEVR----QSFQKL--------QNM------GFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIM 227 (281)
Q Consensus 167 ~~~~~-~~~~~~~er----~~~~~l--------~~~------gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il 227 (281)
-...+ ...+..... ...... ... .+.+++ ......||+|. .+.+.||||||
T Consensus 266 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~t~~~-------~~~~~riDyI~ 335 (398)
T 3ngq_A 266 LSNGGVADNHKDFKELRYNECLMNFSCNGKNGSSEGRITHGFQLKSAY---ENNLMPYTNYT-------FDFKGVIDYIF 335 (398)
T ss_dssp HHHTEEETTCGGGCC-----GGGGGCC-------CCEEECSCCEEETT---TTTSSSCSEEC-------SSCEECCEEEE
T ss_pred HHCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCEEC-------CCCCCEEEEEE
T ss_conf 870897743103444034444444565543344664445676554334---57878752024-------99895388999
Q ss_pred ECHHHHHHHHCEE-EE-CHH---------HCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCC
Q ss_conf 4778983332028-71-222---------06867676221999995588776666536711114
Q gi|254780288|r 228 LSPEATSLLHSAR-ID-TKP---------RGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKP 280 (281)
Q Consensus 228 ~s~~l~~~v~~~~-I~-~~~---------~~~~~~SDH~Pv~~~l~lp~~~~~~~~~~~~~~~~ 280 (281)
+|+++.. +.... +. ... .....+|||+||+|+|+|.. +..+.++.+.+|
T Consensus 336 ~s~~~~~-~~~~~~~~~~~~~~~~~~~~~p~~~~~SDH~pV~a~~~l~~---~~~~~~~~~~~~ 395 (398)
T 3ngq_A 336 YSKTHMN-VEGVLGPLDPQWLVENNITGCPHPHIPSDHFSLLTQLELHP---PLLPLVNGVHLP 395 (398)
T ss_dssp EETTTEE-EEEEECCCCHHHHHHTTCCSSCBTTBCSSBCCEEEEEEECC---C-----------
T ss_pred EECCCCC-EEEEECCCCHHHHCCCCCCCCCCCCCCCCCHHEEEEEEECC---CCCCCCCCCCCC
T ss_conf 7376463-44420567778712000257778899885140799999718---998877766788