HHSEARCH alignment of GI: 254780288 and SCOP domain: d1hd7a_

Alignment
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=100.00  E-value=0  Score=292.50  Aligned_cols=252  Identities=29%  Similarity=0.480  Sum_probs=176.4

Q ss_pred             CCCEEEEEEECCHHHHHH-HHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEE----EECCCCCCEEEEEEECC
Q ss_conf             700799871031888899-8999998728988999856579445897787328978999----30477651489874031
Q gi|254780288|r    2 SVVTVATWNVNSIRARIH-NLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET----CGQKSYNGVAILSKYQP   76 (281)
Q Consensus         2 ~~lrI~TwNinglr~r~~-~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~----~~~k~~~GvaIlsk~~~   76 (281)
                      ++|||+||||||+|++.+ .+.+||++++||||||||||+.++++..+.....+|.+..    .+.++..|++++++..+
T Consensus        17 ~~mki~S~NvnGlr~~~~~~~~~~i~~~~pDIi~LQE~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   96 (275)
T d1hd7a_          17 ATLKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPSDKEGYSGVGLLSRQCP   96 (275)
T ss_dssp             CCEEEEEEECSSHHHHHHTTHHHHHHHHCCSEEEEECCCCCC-----------CCCEEEEECC-----CCCEEEEESSCC
T ss_pred             CCEEEEEEEECCHHHHHHCCHHHHHHHCCCCEEEEECCCCCHHHCCHHHHHCCCCCEEEEEEECCCCCCCCCCEECCCCC
T ss_conf             76799999825687613435899997589989998822058233888787165764356643202333344201215686


Q ss_pred             EEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf             37863255564432330101100023207999631046678544310123677776553322232014760000110146
Q gi|254780288|r   77 IEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNI  156 (281)
Q Consensus        77 ~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~  156 (281)
                      ..+.........+.++.+.....  ....+....++.+.  . ...++.+.. ....+..........+.+++++||||+
T Consensus        97 ~~v~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~--~-~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~gd~n~  170 (275)
T d1hd7a_          97 LKVSYGIGDEEHDQEGRVIVAEF--DSFVLVTAYVPNAG--R-GLVRLEYRQ-RWDEAFRKFLKGLASRKPLVLCGDLNV  170 (275)
T ss_dssp             SEEEESCSCGGGSSSSCEEEEEC--SSCEEEEEECCCCC--G-GGTTHHHHH-HHHHHHHHHHHHHHHHSCEEEEEECSC
T ss_pred             EEEEECCCCCCCHHHHHEEEEEE--CCEEEEEEEEEECC--C-CCCCHHHHH-HHCCCCCCCCCCCCCCCCEEEECCCCC
T ss_conf             03664233453022321124553--13043102454046--6-541013333-310020000100124775376112245


Q ss_pred             CCCCCCCHHHHHCCCCCCCCHHHHHHHHHC-CCCCHHHHCCCCCC-CCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHH
Q ss_conf             867420000121048734463455653210-33100000013378-8872003578767525577713569994778983
Q gi|254780288|r  157 IPQPHDCYNPIIWENDACFTLEVRQSFQKL-QNMGFTDAIRATHD-THHLYSFWDYYADSWSKNKGIRIDHIMLSPEATS  234 (281)
Q Consensus       157 a~~~~D~~~~~~~~~~~~~~~~er~~~~~l-~~~gl~D~~r~~~~-~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~  234 (281)
                      ++.+.+..+........+....|...|..+ .+.||.|+||..+| .+..||||+++.+++.+|.|+||||||||+++.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~l~~~~~~D~~r~~~p~~~~~~t~~~~~~~~~~~~~g~RIDyi~vs~~l~~  250 (275)
T d1hd7a_         171 AHEEIDLRNPKGNKKNAGFTPQERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLP  250 (275)
T ss_dssp             CCSGGGBSCHHHHTTSTTSCHHHHHHHHHHHHHTTCEEHHHHHCTTCTTCCSBCCSGGGHHHHTCCBCCEEEEECGGGGG
T ss_pred             CCCHHHHCCCHHHHCCCCCCCCCCHHHHHHHCCCCCCCCEEEECCCCCCCEEECCCCCCCCCCCCCEEEEEEEECHHHHH
T ss_conf             72334404510121022222211045665540367653202403776873023233478641899767579996718861


Q ss_pred             HHHCEEEECHHHCCCCCCCCCCEEEEEEC
Q ss_conf             33202871222068676762219999955
Q gi|254780288|r  235 LLHSARIDTKPRGWTKPSDHTPVIVSLDI  263 (281)
Q Consensus       235 ~v~~~~I~~~~~~~~~~SDH~Pv~~~l~l  263 (281)
                      ++.++.|+..    ..+|||+||+++|+|
T Consensus       251 ~v~~~~i~~~----~~~SDH~PV~v~l~l  275 (275)
T d1hd7a_         251 ALCDSKIRSK----ALGSDHCPITLYLAL  275 (275)
T ss_dssp             GEEEEEECTT----CCSSSBCCEEEEECC
T ss_pred             HEEEEEECCC----CCCCCCCCEEEEEEC
T ss_conf             2558998789----999980057999979


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: DNA repair endonuclease Hap1
species: Human (Homo sapiens) [TaxId: 9606]