HHSEARCH alignment of GI: 254780288 and SCOP domain: d1sr4b_

Alignment
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B {Haemophilus ducreyi [TaxId: 730]}
Probab=99.96  E-value=5.7e-30  Score=185.20  Aligned_cols=223  Identities=18%  Similarity=0.096  Sum_probs=124.0

Q ss_pred             CCCCEEEEEEECCHHH------HHHHHHHHHHHHCCCEEEEEEEECCHHHC--CHHHHHHCCC--EEEE-----------
Q ss_conf             9700799871031888------89989999987289889998565794458--9778732897--8999-----------
Q gi|254780288|r    1 MSVVTVATWNVNSIRA------RIHNLAAWIKENNPDIICLQETKTEDKNF--PFETLQSLNY--HIET-----------   59 (281)
Q Consensus         1 m~~lrI~TwNinglr~------r~~~l~~~l~~~~pDIi~LQEvk~~~~~~--~~~~~~~~gy--~~~~-----------   59 (281)
                      |+.+||+||||+|++.      +......+++..+|||||||||.......  ........++  ..+.           
T Consensus         2 ~~~~rv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DIi~LQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (261)
T d1sr4b_           2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQHGGTPIEEYTWNLGTRSRPNM   81 (261)
T ss_dssp             GGGSCEEEEECCCCSSSSHHHHHHHHHHHHCSTTCCSEEEEESCCSCCTTCEECSCCCCCSSSCCEEEEEESSCSSSCCE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCCEEEEECCCCCCCCCE
T ss_conf             87888999967968787555544899999985579998999856754563267998876507651144311466667753


Q ss_pred             ----E----ECCCCCCEEEEEEECCEEEEECCCCCCCCCCCCE-ECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHH
Q ss_conf             ----3----0477651489874031378632555644323301-011000232079996310466785443101236777
Q gi|254780288|r   60 ----C----GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARF-IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISW  130 (281)
Q Consensus        60 ----~----~~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~-i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~  130 (281)
                          .    ..+.++|+||+||.|+..+....+... ....|. +.+.+    ....++++|+.+........  .....
T Consensus        82 ~~~~~~~~~~~~~~~g~~~ls~~~~~~~~~~~~~~~-~~~~r~~~~~~~----~~~~~~~~~~~~~~~~~~~~--~~~~~  154 (261)
T d1sr4b_          82 VYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSS-VLQSRPAVGIRI----GTDVFFTVHALATGGSDAVS--LIRNI  154 (261)
T ss_dssp             EEEEEECCCTTTSCSCEEEEESSCCSEEEEECCCCC-SSCCCCEEEEEE----TTEEEEEEECCTTTTTTHHH--HHHHH
T ss_pred             EEEEEECCCCCCCEEEEEEEECCCCCCCEECCCCCC-CCCCCEEEEEEE----ECCCCEEEEEEECCCCCCHH--HHHHH
T ss_conf             689950443345301259996887501045368876-666522799998----41551479996147751279--99999


Q ss_pred             HHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCC
Q ss_conf             76553322232014760000110146867420000121048734463455653210331000000133788872003578
Q gi|254780288|r  131 IKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDY  210 (281)
Q Consensus       131 ~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~  210 (281)
                      ...+..........+.|+|+|||||..+.+                    ..+..+.+.++.|+++..++..  +||++ 
T Consensus       155 ~~~~~~~~~~~~~~~~~~iv~GDfN~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~--~t~~~-  211 (261)
T d1sr4b_         155 FTTFNSSSSPPERRVYSWMVVGDFNRAPAN--------------------LEVALRQEPAVSENTIIIAPTE--PTHRS-  211 (261)
T ss_dssp             HHHHHC---CGGGGGCEEEEEEECSSCHHH--------------------HHHHHTTSHHHHHTCEEECCSS--CSBTT-
T ss_pred             HHHHHHHHHHHHCCCCCEEEEEECCCCCCC--------------------HHHHHHHHHCCCCCEECCCCCC--CCCCC-
T ss_conf             999999999863569977996332767640--------------------8888766410222100158998--96898-


Q ss_pred             CCCCCCCCCCCEEEEEEECHHHHHHHH------CEEEECHHHCCCCCCCCCCEEEEEE
Q ss_conf             767525577713569994778983332------0287122206867676221999995
Q gi|254780288|r  211 YADSWSKNKGIRIDHIMLSPEATSLLH------SARIDTKPRGWTKPSDHTPVIVSLD  262 (281)
Q Consensus       211 ~~~~~~~n~G~RID~il~s~~l~~~v~------~~~I~~~~~~~~~~SDH~Pv~~~l~  262 (281)
                               |.||||||+++.....+.      .+.+.........+|||+||...++
T Consensus       212 ---------~~~iD~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~f~~~  260 (261)
T d1sr4b_         212 ---------GNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVRD  260 (261)
T ss_dssp             ---------SCCCEEEEEECTTSCTTCGGGCCEEEEECGGGCSSCCSSSBCCEEEEEC
T ss_pred             ---------CCEECEEEECCCCCCEEEECCCCEEEEEECCCCCCCCCCCCCCEEEEEC
T ss_conf             ---------9803669966800032540441102355202357996177841089868


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Cytolethal distending toxin subunit B
species: Haemophilus ducreyi [TaxId: 730]