HHSEARCH alignment of GI: 254780288 and SCOP domain: d1wdua_

Alignment
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon (ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Probab=100.00  E-value=1.6e-34  Score=210.85  Aligned_cols=223  Identities=14%  Similarity=0.154  Sum_probs=141.1

Q ss_pred             CCEEEEEEECCHHHHHHHHHHHHHHHCCCEEEEEEEECCHHHCCHHHHHHCCCEEEEEE--CCCCCCEEEEEEECCEEEE
Q ss_conf             00799871031888899899999872898899985657944589778732897899930--4776514898740313786
Q gi|254780288|r    3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG--QKSYNGVAILSKYQPIEIV   80 (281)
Q Consensus         3 ~lrI~TwNinglr~r~~~l~~~l~~~~pDIi~LQEvk~~~~~~~~~~~~~~gy~~~~~~--~k~~~GvaIlsk~~~~~v~   80 (281)
                      -|||+||||++.+++...+..++.+.+||||||||++......   .....++.++...  .++..|++++++.+.....
T Consensus         2 p~rV~~~Nv~~~~~~~~~l~~~i~~~~~DIi~lQE~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   78 (228)
T d1wdua_           2 PYRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKS---MKGFRGVRVFQSTAQGDGTVKAAIAVFDHDLDVI   78 (228)
T ss_dssp             CEEEEEEECTTCHHHHHHHHHHHHHHTCSEEEEESCCC---------CCCSSCEEEECCCCTTCCCCEEEEECCSSCEEE
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCCCC---CCCCCCEEEEECCCCCCCCCCEEEEEECCCCCEE
T ss_conf             8789942039976789999999973699789998787489885---3113623788345778987625999981464045


Q ss_pred             ECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCC
Q ss_conf             32555644323301011000232079996310466785443101236777765533222320147600001101468674
Q gi|254780288|r   81 THLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQP  160 (281)
Q Consensus        81 ~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~~~l~~~l~~~~~~~~~vIi~GDFN~a~~~  160 (281)
                      . .+...   ..+.+.+.+...+..++++|+|+|++.+..        .+++.+...+..  ....++|+|||||+.+..
T Consensus        79 ~-~~~~~---~~~~~~~~i~~~~~~i~v~~~y~~~~~~~~--------~~~~~l~~~~~~--~~~~~vIi~GDfN~~~~~  144 (228)
T d1wdua_          79 Q-YPQLT---TNNIVVVGIRTRAWEITLVSYYFEPDKPIE--------SYLEQIKRVERK--MGPKRLIFGGDANAKSTW  144 (228)
T ss_dssp             E-CTTTC---CSSEEEEEEECSSCEEEEEEEECCTTSCSH--------HHHHHHHHHHHT--TCSSSEEEEEECCCCCGG
T ss_pred             C-CCCCC---CCCEEEEEEECCCCCEEEEEEEECCCCCCH--------HHHHHHHHHHHH--CCCCEEEEECCCCCCCHH
T ss_conf             0-46778---899799999828802899999818743106--------899999999874--589539992253557566


Q ss_pred             CCCHHHHHCCCCCCCCHHHHHHHHH-CCCCCHHHHCCCCCCCCCCEECCCCCCCCCCCCCCCEEEEEEECHHHHHHHHCE
Q ss_conf             2000012104873446345565321-033100000013378887200357876752557771356999477898333202
Q gi|254780288|r  161 HDCYNPIIWENDACFTLEVRQSFQK-LQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA  239 (281)
Q Consensus       161 ~D~~~~~~~~~~~~~~~~er~~~~~-l~~~gl~D~~r~~~~~~~~yT~~~~~~~~~~~n~G~RID~il~s~~l~~~v~~~  239 (281)
                      .+   ..      . .......+.. +...++.+.     .....+|||..+.+.+..   .||||+|+|+.+..++.++
T Consensus       145 ~~---~~------~-~~~~~~~l~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~---~rID~~~~s~~l~~~v~~~  206 (228)
T d1wdua_         145 WG---SK------E-DDARGDQLMGTLGELGLHIL-----NEGDVPTFDTIRGGKRYQ---SRVDVTFCTEDMLDLIDGW  206 (228)
T ss_dssp             GT---CS------S-CCHHHHHHHHHHHHHTCEEC-----CCSCCCSEEC-----CCE---ECCEEEEECGGGBTTEEEE
T ss_pred             HH---CC------C-CHHHHHHHHHHHHHHCCCCC-----CCCCCCCCCCCCCCCCCC---CCEEEEEECCHHHHHCEEE
T ss_conf             73---24------3-20578999999986075311-----257732200356787888---5448999780586213599


Q ss_pred             EEECHHHCCCCCCCCCCEEEEEECC
Q ss_conf             8712220686767622199999558
Q gi|254780288|r  240 RIDTKPRGWTKPSDHTPVIVSLDIP  264 (281)
Q Consensus       240 ~I~~~~~~~~~~SDH~Pv~~~l~lp  264 (281)
                      .|.....    .|||.||+++|++.
T Consensus       207 ~v~~~~~----~SDH~~v~~~l~~~  227 (228)
T d1wdua_         207 RVDEDLV----SSDHNGMVFNIRLQ  227 (228)
T ss_dssp             EECTTSS----SSSBCCEEEEECCC
T ss_pred             EECCCCC----CCCCHHEEEEEEEE
T ss_conf             9989999----99935769999971


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Endonuclease domain of TRAS1 retrotransposon (ORF2)
species: Silkworm (Bombyx mori) [TaxId: 7091]