HHSEARCH alignment of GI: 254780288 and SCOP domain: d2f1na1

Alignment
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B {Escherichia coli [TaxId: 562]}
Probab=99.98  E-value=3.8e-33  Score=203.07  Aligned_cols=217  Identities=16%  Similarity=0.094  Sum_probs=123.4

Q ss_pred             CCCCEEEEEEECCHHHHHH-----HHH-HHHHHHCCCEEEEEEEECCHHH--CCHHHHHHCCCEE---------------
Q ss_conf             9700799871031888899-----899-9998728988999856579445--8977873289789---------------
Q gi|254780288|r    1 MSVVTVATWNVNSIRARIH-----NLA-AWIKENNPDIICLQETKTEDKN--FPFETLQSLNYHI---------------   57 (281)
Q Consensus         1 m~~lrI~TwNinglr~r~~-----~l~-~~l~~~~pDIi~LQEvk~~~~~--~~~~~~~~~gy~~---------------   57 (281)
                      ++.+||+||||+|.+...+     .+. .++...+|||||||||+.....  +....+...++.+               
T Consensus         2 ~~~~rv~TwNi~~~~~~~~~~~~~~~~~~~~~~~~~DVl~lQEv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (250)
T d2f1na1           2 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPSPGIPVRELIWNLSTNSRPQQ   81 (250)
T ss_dssp             GGGCCEEEEEEEECTTSCHHHHHTHHHHHHSSTTCCSEEEEEEECSCCTTCEECCCCCCCSSCCCEEEEEECCSSSSSCE
T ss_pred             CCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCCCCE
T ss_conf             87889999947977576556555999999986689899999826863343366765443027642002321344567632


Q ss_pred             --EEE----ECCCCCCEEEEEEECCEEEEECCCCCCCCCCCCEECCCCCCCCCEEEEEEEECCCCCCCCCCCHHHHHHHH
Q ss_conf             --993----04776514898740313786325556443233010110002320799963104667854431012367777
Q gi|254780288|r   58 --ETC----GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWI  131 (281)
Q Consensus        58 --~~~----~~k~~~GvaIlsk~~~~~v~~~~~~~~~d~~~R~i~~~i~~~~~~i~v~n~y~P~g~~~~~~~~~~k~~~~  131 (281)
                        .+.    ...+..|++++||+++..+....+...  ...+++.++    .+.++|+|+|+|++...+..+   +.++.
T Consensus        82 ~~~~~~~~~~~~~~~g~~i~s~~~~~~~~~~~~~~~--~~r~~~~~~----~~~~~v~n~Hl~~~~~~~~~~---~~~~~  152 (250)
T d2f1na1          82 VYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQ--GGRPLLGIR----IGNDAFFTAHAIAMRNNDAPA---LVEEV  152 (250)
T ss_dssp             EEEEEECSCSSSCSSCEEEEESSCCSEEEEECCSST--TCCCEEEEE----ETTEEEEEEECCSSSSCSHHH---HHHHH
T ss_pred             EEEEEECCCCCCCCCCEEEEECCCCCEEEECCCCCC--CCCCEEEEE----ECEEEEEEEECCCCCCHHHHH---HHHHH
T ss_conf             678751145446571459998875305675178754--221103676----320899999818999565999---99999


Q ss_pred             HHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCHHHHHCCCCCCCCHHHHHHHHHCCCCCHHHHCCCCCCCCCCEECCCCC
Q ss_conf             65533222320147600001101468674200001210487344634556532103310000001337888720035787
Q gi|254780288|r  132 KRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY  211 (281)
Q Consensus       132 ~~l~~~l~~~~~~~~~vIi~GDFN~a~~~~D~~~~~~~~~~~~~~~~er~~~~~l~~~gl~D~~r~~~~~~~~yT~~~~~  211 (281)
                      +.+.+.+.....+..|+|+|||||+.|.+..                      .....++.|.++..++..  +||.   
T Consensus       153 ~~~~~~~~~~~~~~~~~iv~GDfN~~p~~~~----------------------~~~~~~~~~~~~~~~~~~--~t~~---  205 (250)
T d2f1na1         153 YNFFRDSRDPVHQALNWMILGDFNREPADLE----------------------MNLTVPVRRASEIISPAA--ATQT---  205 (250)
T ss_dssp             HHHHHTCSSHHHHTCEEEEEEECSSCHHHHH----------------------TTSCHHHHHTEEEECCSS--CSBT---
T ss_pred             HHHHHHHHHHHCCCCCEEEECCCCCCCCHHH----------------------HHHHCCCCCEEEECCCCC--CCCC---
T ss_conf             9999998764146886687345576871255----------------------554201122123218798--8657---


Q ss_pred             CCCCCCCCCCEEEEEEECHHHHHHHHCEE--EECHHHCCCCCCCCCCEEEE
Q ss_conf             67525577713569994778983332028--71222068676762219999
Q gi|254780288|r  212 ADSWSKNKGIRIDHIMLSPEATSLLHSAR--IDTKPRGWTKPSDHTPVIVS  260 (281)
Q Consensus       212 ~~~~~~n~G~RID~il~s~~l~~~v~~~~--I~~~~~~~~~~SDH~Pv~~~  260 (281)
                             .|+||||||+|+++..+.....  +.........+|||+||.+.
T Consensus       206 -------~~~riD~i~~s~~~~~~~~~~~~~~~~~~~~~~~~SDH~PV~~~  249 (250)
T d2f1na1         206 -------SQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVS  249 (250)
T ss_dssp             -------TSCCCEEEEEEESSCCCCCCCEEEETTTTSCCCCSCSBCCEEEE
T ss_pred             -------CCCCEEEEEEECHHHCCCCEEEEEEECCCCCCCCCCCCCCEEEE
T ss_conf             -------99957999982668626413678875143589971884255876


SCOP domain information

class: Alpha and beta proteins (a+b)
fold: DNase I-like
superfamily: DNase I-like
family: DNase I-like
domain: Cytolethal distending toxin subunit B
species: Escherichia coli [TaxId: 562]