PSIBLAST alignment of GI: 254780288 and protein with PDB id: 2jc5

gi|157883966|pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseria Meningitidis Length = 259
 Score =  176 bits (447), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 13/264 (4%)

Query: 3   VVTVATWNVNSIRAR-IHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG 61
           ++ + + NVN IR+        +I  +  DI+C+QE K ++ +   +       H     
Sbjct: 1   MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHC 60

Query: 62  --QKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
             ++ Y+GVA+ SK +P  +   +  ++ D + RF+   F      L + +LYLP G+  
Sbjct: 61  AEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFG----RLSVISLYLPSGSSA 116

Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
              +   K  ++  F             ++  GD+NI  Q  D  N    + ++ F  E 
Sbjct: 117 EERQQV-KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE 175

Query: 180 RQSF-QKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238
           R+   + +  +G+TD  R  +     Y++W     +++K+ G RID+ M++PE  +   S
Sbjct: 176 REWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVS 235

Query: 239 ARIDTKPRGWTKPSDHTPVIVSLD 262
           A +        K SDH P++V  D
Sbjct: 236 AHVYKD----EKFSDHAPLVVEYD 255