PSIBLAST alignment of GI: 254780288 and protein with PDB id: 2jc5
gi|157883966|pdb|2JC5|A Chain A, Apurinic Apyrimidinic (Ap) Endonuclease (Nape) From Neisseria Meningitidis Length = 259
Score = 176 bits (447), Expect = 2e-42, Method: Composition-based stats.
Identities = 65/264 (24%), Positives = 120/264 (45%), Gaps = 13/264 (4%)
Query: 3 VVTVATWNVNSIRAR-IHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG 61
++ + + NVN IR+ +I + DI+C+QE K ++ + + H
Sbjct: 1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHC 60
Query: 62 --QKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
++ Y+GVA+ SK +P + + ++ D + RF+ F L + +LYLP G+
Sbjct: 61 AEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDFG----RLSVISLYLPSGSSA 116
Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
+ K ++ F ++ GD+NI Q D N + ++ F E
Sbjct: 117 EERQQV-KYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE 175
Query: 180 RQSF-QKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238
R+ + + +G+TD R + Y++W +++K+ G RID+ M++PE + S
Sbjct: 176 REWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVS 235
Query: 239 ARIDTKPRGWTKPSDHTPVIVSLD 262
A + K SDH P++V D
Sbjct: 236 AHVYKD----EKFSDHAPLVVEYD 255