RPSBLAST alignment of GI: 254780288 and MMDB domain: 1vyb_A_

>1vyb_A (A:) ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens}Length = 238

 Score =  111 bits (276), Expect = 1e-25
 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 34/261 (13%)

Query: 4   VTVATWNVNSIRARI--HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG 61
           +T+ T N+N + + I  H LA+WIK  +P + C+QET    ++     ++      +  G
Sbjct: 8   ITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANG 67

Query: 62  QKSYNGVAILSKYQPIEIVTH-LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120
           ++   GVAIL   +     T      +                + L I N+Y P+     
Sbjct: 68  KQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQ----EELTILNIYAPNTGA-- 121

Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180
                            +  + +L+   +  GD+N      D               + +
Sbjct: 122 ---------PRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTR------QKVNKDTQ 166

Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240
           +    L      D  R  H     Y+F+         +   +IDHI+ S    S      
Sbjct: 167 ELNSALHQADLIDIYRTLHPKSTEYTFFSAP-----HHTYSKIDHIVGSKALLSKCKRTE 221

Query: 241 IDTKPRGWTKPSDHTPVIVSL 261
           I          SDH+ + + L
Sbjct: 222 II-----TNYLSDHSAIKLEL 237