RPS-BLAST 2.2.22 [Sep-27-2009] Database: mmdb70 33,805 sequences; 4,956,049 total letters Searching..................................................done Query= gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] (281 letters) >1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} (A:) Length = 268 Score = 170 bits (430), Expect = 2e-43 Identities = 80/265 (30%), Positives = 122/265 (46%), Gaps = 8/265 (3%) Query: 5 TVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKS 64 ++N+N +RAR H L A ++++ PD+I LQETK D FP E + L Y++ GQK Sbjct: 2 KFVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKG 61 Query: 65 YNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT-STK 123 + GVA+L+K PI + PGDD + Q R I A + + N Y P G K Sbjct: 62 HYGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIK 121 Query: 124 YDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV---- 179 + K + + + L+ + P++ GD NI P D T + Sbjct: 122 FPAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLP 181 Query: 180 --RQSFQKLQNMGFTDAIRA-THDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLL 236 R+ +L + G D R T +S++DY + + N+G+RID ++ S Sbjct: 182 EEREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECC 241 Query: 237 HSARIDTKPRGWTKPSDHTPVIVSL 261 ID + R KPSDH PV + Sbjct: 242 VETGIDYEIRSMEKPSDHAPVWATF 266 >2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis} (A:) Length = 256 Score = 156 bits (395), Expect = 2e-39 Identities = 91/258 (35%), Positives = 133/258 (51%), Gaps = 4/258 (1%) Query: 5 TVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKS 64 + TWNVNS+ R+ + + +N PDI+ LQE K + FP LQ + +H GQK+ Sbjct: 2 KITTWNVNSLNVRLPQVQNLLADNPPDILVLQELKLDQDKFPAAALQMMGWHCVWSGQKT 61 Query: 65 YNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKY 124 YNGVAI+S+ P ++ LP D Q R I AT + R+ N+Y +G + S K+ Sbjct: 62 YNGVAIVSRSVPQDVHFGLPALPDDPQRRVIAATVSGV----RVINVYCVNGEALDSPKF 117 Query: 125 DDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQ 184 K W F + L+ GD+NI P DCY+P W + RQ FQ Sbjct: 118 KYKEQWFAALTEFVRDEMTRHGKLVLLGDFNIAPADADCYDPEKWHEKIHCSSVERQWFQ 177 Query: 185 KLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTK 244 L ++G TD++R H Y+++DY + + G+RIDHI++SP + L R+D + Sbjct: 178 NLLDLGLTDSLRQVHPEGAFYTWFDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLE 237 Query: 245 PRGWTKPSDHTPVIVSLD 262 R +PSDH PV D Sbjct: 238 TRALERPSDHAPVTAEFD 255 >2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus} (A:) Length = 257 Score = 156 bits (394), Expect = 3e-39 Identities = 86/262 (32%), Positives = 139/262 (53%), Gaps = 6/262 (2%) Query: 3 VVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQ 62 ++ +AT+NVNSIR+R+H + W+KEN PDI+C+QETK E++ FP + YH+ G Sbjct: 1 MLKIATFNVNSIRSRLHIVIPWLKENKPDILCMQETKVENRKFPEADFHRIGYHVVFSGS 60 Query: 63 KSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITST 122 K NGVAI S +P ++ L + D I+ + N Y+P G I S Sbjct: 61 KGRNGVAIASLEEPEDVSFGLDSEPKDEDRLIRAKIAGID-----VINTYVPQGFKIDSE 115 Query: 123 KYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQS 182 KY K+ W++R + + ++ ++ GD N+ P+P D ++P +N F + R++ Sbjct: 116 KYQYKLQWLERLYHYLQKTVDFRSFAVWCGDMNVAPEPIDVHSPDKLKNHVXFHEDARRA 175 Query: 183 FQKLQNMGFTDAIRATHDTHHLYSFWDYYA-DSWSKNKGIRIDHIMLSPEATSLLHSARI 241 ++K+ +GF D +R H +Y+F+DY + + G R D I+ +P Sbjct: 176 YKKILELGFVDVLRKIHPNERIYTFYDYRVKGAIERGLGWRGDAILATPPLAERCVDCYA 235 Query: 242 DTKPRGWTKPSDHTPVIVSLDI 263 D KPR KPSDH P++ D+ Sbjct: 236 DIKPRLAEKPSDHLPLVAVFDV 257 >1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} (A:) Length = 318 Score = 154 bits (388), Expect = 2e-38 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 17/267 (6%) Query: 4 VTVATWNVNSIRARI-HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSL----NYHIE 58 + + +WNV+ +RA I W+KE PDI+CLQETK + P E + Y Sbjct: 62 LKICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 121 Query: 59 TCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNP 118 ++ Y+GV +LS+ P+++ + ++ D + R I A F + + Y+P+ Sbjct: 122 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEF----DSFVLVTAYVPNAGR 177 Query: 119 ITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLE 178 + + + W + F +F + L +PL+ GD N+ + D NP + +A FT + Sbjct: 178 -GLVRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 235 Query: 179 VRQSFQKLQNM-GFTDAIRATH-DTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLL 236 RQ F +L D+ R + +T + Y+FW Y ++ SKN G R+D+ +LS L Sbjct: 236 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 295 Query: 237 HSARIDTKPRGWTKPSDHTPVIVSLDI 263 ++I + SDH P+ + L + Sbjct: 296 CDSKIRS----KALGSDHCPITLYLAL 318 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:1-134,A:233-439) Length = 341 Score = 149 bits (376), Expect = 5e-37 Identities = 33/202 (16%), Positives = 66/202 (32%), Gaps = 31/202 (15%) Query: 61 GQKSYNGVAILSKYQPIEIVTHLPG--DDLDVQARFIEATFTINT------QTLRIGNLY 112 + G A+ S+ Q D + R + + + + + N Y Sbjct: 139 HARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTY 198 Query: 113 LPHGNPITSTKYDDKISWIKRFLRFASQRLEL------------------EEPLIFAGDY 154 + + + S+ + + I+AGD Sbjct: 199 VANSGMGLTRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDL 258 Query: 155 NIIPQPHDCYNPIIWEN---DACFTLEVRQSFQK-LQNMGFTDAIRA-THDTHHLYSFWD 209 N+ + +D Y +++ + F E R SF++ +Q D R +YSFW Sbjct: 259 NVAERDYDRYYAGTFKSMQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAGPVYSFWS 318 Query: 210 YYADSWSKNKGIRIDHIMLSPE 231 + +N G R+D+ ++S Sbjct: 319 QRINGRPRNLGWRLDYFVVSSR 340 >2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A (A:) Length = 285 Score = 144 bits (362), Expect = 2e-35 Identities = 75/267 (28%), Positives = 130/267 (48%), Gaps = 17/267 (6%) Query: 4 VTVATWNVNSIRARI-HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC-- 60 + +A+WNV+ +RA I W+KE PDI+CLQETK + P E + + Sbjct: 29 LKIASWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSA 88 Query: 61 --GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNP 118 ++ Y+GV +LS+ P+++ + ++ D + R I A F + + Y+P+ Sbjct: 89 PSDKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEF----DSFVLVTAYVPNAGR 144 Query: 119 ITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLE 178 + + + W + F +F + L +PL+ GD N+ + D NP + +A FT + Sbjct: 145 -GLVRLEYRQRWDEAFRKFL-KGLASRKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQ 202 Query: 179 VRQSFQKLQNM-GFTDAIRATH-DTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLL 236 RQ F +L D+ R + +T + Y+FW Y ++ SKN G R+D+ +LS L Sbjct: 203 ERQGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPAL 262 Query: 237 HSARIDTKPRGWTKPSDHTPVIVSLDI 263 ++I SDH P+ + L + Sbjct: 263 CDSKIR----SKALGSDHCPITLYLAL 285 >2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis} (A:) Length = 259 Score = 141 bits (354), Expect = 1e-34 Identities = 65/267 (24%), Positives = 122/267 (45%), Gaps = 13/267 (4%) Query: 3 VVTVATWNVNSIRARI-HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSL--NYHIET 59 ++ + + NVN IR+ +I + DI+C+QE K ++ + + + H Sbjct: 1 MLKIISANVNGIRSAYKKGFYEYIAASGADIVCVQELKAQEADLSADMKNPHGMHGHWHC 60 Query: 60 CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119 ++ Y+GVA+ SK +P + + ++ D + RF+ F L + +LYLP G+ Sbjct: 61 AEKRGYSGVAVYSKRKPDNVQIGMGIEEFDREGRFVRCDF----GRLSVISLYLPSGSSA 116 Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179 + K ++ F ++ GD+NI Q D N + ++ F E Sbjct: 117 E-ERQQVKYRFLDAFYPMLEAMKNEGRDIVVCGDWNIAHQNIDLKNWKGNQKNSGFLPEE 175 Query: 180 RQSFQKLQN-MGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238 R+ K+ + +G+TD R + Y++W +++K+ G RID+ M++PE + S Sbjct: 176 REWIGKVIHKLGWTDMWRTLYPDVPGYTWWSNRGQAYAKDVGWRIDYQMVTPELAAKAVS 235 Query: 239 ARIDTKPRGWTKPSDHTPVIVSLDIPE 265 A + + SDH P++V D Sbjct: 236 AHVYKDEK----FSDHAPLVVEYDYAA 258 >3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482} (A:) Length = 267 Score = 125 bits (314), Expect = 5e-30 Identities = 33/278 (11%), Positives = 67/278 (24%), Gaps = 25/278 (8%) Query: 4 VTVATWNVNSIRA---------RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQS-- 52 V AT+N+ R + +IK++ DI+ QE L Sbjct: 4 VRWATFNIRYDNPQDSLNNWQYRKDRVCQFIKDHELDIVGXQEVLHNQFQDLRAGLPEYD 63 Query: 53 LNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLY 112 G+ + + + E++ + + + + Sbjct: 64 GIGVGRDDGKTAGEYAPLFYRKDKYEVLDSNTFWLAENPDSVGXXGW----DAVCVRIAT 119 Query: 113 LPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWEND 172 + K ++ + E A + P + D Sbjct: 120 WAKFKDKATGKIFXAVNTHFDHVGE-------EARRQSALLIIRKIKEIVGERPAVVTGD 172 Query: 173 ACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEA 232 T N T + + +ID I ++P+ Sbjct: 173 FNVTDASDAYETITTNEFVXKDAYKTAARVTGVDYTFHDFARIPAEDCEKIDFIFVTPQV 232 Query: 233 TSLLHSARIDTKPRGWTKPSDHTPVIVSLDIPEPRKKQ 270 + S I + SDH P + L++ Sbjct: 233 L--VKSCEIPAEVP-EALLSDHNPQLADLELEHHHHHH 267 >3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis} (A:) Length = 257 Score = 123 bits (308), Expect = 3e-29 Identities = 37/268 (13%), Positives = 70/268 (26%), Gaps = 27/268 (10%) Query: 6 VATWNVNSIRA---------RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYH 56 +AT+NV R + I ++ + C+QE + Sbjct: 3 IATYNVRVDTEYDQDWQWSFRKEAVCQLINFHDWSLCCIQEVRPNQVRDLKAYTTFTCLS 62 Query: 57 IETCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHG 116 E G G+AIL Q ++ + + + + + L+ Sbjct: 63 AEREGDGQGEGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPE-AGCPRIALWGLFKETT 121 Query: 117 NPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFT 176 + + I R A + LEE Y + Sbjct: 122 QNTPFLVINVHLDHISAHARLAGXTVILEELHDKIAQYPTLLXGDFNAESGEE------- 174 Query: 177 LEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLL 236 +L F D+ +F ++ + + ID+I + + Sbjct: 175 ------VHQLVQKKFQDSKNLATHYGPRGTFQNFT-YTKPWAELEEIDYIYVKGW---QV 224 Query: 237 HSARIDTKPRGWTKPSDHTPVIVSLDIP 264 T PSDH P+ + Sbjct: 225 QQTASLTDSIDGRFPSDHFPLEAEVAGE 252 >2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} (A:) Length = 240 Score = 114 bits (285), Expect = 2e-26 Identities = 20/269 (7%), Positives = 55/269 (20%), Gaps = 48/269 (17%) Query: 1 MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC 60 + + N+ L + ++ DI+ +QE + Sbjct: 5 RPRLRIGQINLGGAEDATRELPSIARDLGLDIVLVQEQY--------------SMVGFLA 50 Query: 61 GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120 ++ + + + + + L + + Y + +PI Sbjct: 51 QCGAHPKAGVYIRNRVLPCAVLHHLSS--THITVVHIGG----WDLYMVSAYFQYSDPID 104 Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180 + ++ D N Sbjct: 105 PYLHRLGNIL----------DRLRGARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRA 154 Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240 + + H + + Y D +G+R+ Sbjct: 155 KMEDFIGARRLVVHNADGHLPTFSTANGESYVDVTLSTRGVRVSEWR------------- 201 Query: 241 IDTKPRGWTKPSDHTPVIVSLDIPEPRKK 269 SDH ++ + ++ Sbjct: 202 -----VTNESSSDHRLIVFGVGGGTTGER 225 >1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} (A:) Length = 301 Score = 111 bits (276), Expect = 1e-25 Identities = 40/297 (13%), Positives = 83/297 (27%), Gaps = 44/297 (14%) Query: 4 VTVATWNVNSIRA----------RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSL 53 + + NV R +A N D++ L E + Sbjct: 11 FKITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLRE 70 Query: 54 NYHIETCGQKSYN------------------GVAILSKYQPIEIVTHL----PGDDLDVQ 91 Y +T GVA++S++ +E H+ G D Sbjct: 71 MYPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSN 130 Query: 92 ARFIEATFTINTQTLRIGNLYLPHGNPITS--TKYDDKISWIKRFLRF-ASQRLELEEPL 148 F N + I + + + S T + ++ F A + + +E + Sbjct: 131 KGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEII 190 Query: 149 IFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATH--DTHHLYS 206 GD N+ + ++ + + + Q T+++ Y Sbjct: 191 FIGGDLNVNYGTDEYHDMLKLL---NVSSPANFNGQMATWDPTTNSMLKESYPKAAPEYL 247 Query: 207 FWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 + + + ++ + S + K + SDH PV+ D Sbjct: 248 DYIFVENGHARPHSWHNKVLHTKSP----QWSVKSWFKTYTYQDFSDHYPVVGFTDN 300 >1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} (A:) Length = 238 Score = 111 bits (276), Expect = 1e-25 Identities = 50/261 (19%), Positives = 88/261 (33%), Gaps = 34/261 (13%) Query: 4 VTVATWNVNSIRARI--HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCG 61 +T+ T N+N + + I H LA+WIK +P + C+QET ++ ++ + G Sbjct: 8 ITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQANG 67 Query: 62 QKSYNGVAILSKYQPIEIVTH-LPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120 ++ GVAIL + T + + L I N+Y P+ Sbjct: 68 KQKKAGVAILVSDKTDFKPTKIKRDKEGHYIMVKGSIQQ----EELTILNIYAPNTGA-- 121 Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180 + + +L+ + GD+N D + + Sbjct: 122 ---------PRFIKQVLSDLQRDLDSHTLIMGDFNTPLSTLDRSTR------QKVNKDTQ 166 Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240 + L D R H Y+F+ + +IDHI+ S S Sbjct: 167 ELNSALHQADLIDIYRTLHPKSTEYTFFSAP-----HHTYSKIDHIVGSKALLSKCKRTE 221 Query: 241 IDTKPRGWTKPSDHTPVIVSL 261 I SDH+ + + L Sbjct: 222 II-----TNYLSDHSAIKLEL 237 >1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} (A:) Length = 245 Score = 107 bits (268), Expect = 1e-24 Identities = 30/260 (11%), Positives = 63/260 (24%), Gaps = 36/260 (13%) Query: 4 VTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQK 63 V N+ + LA I +QE + T Sbjct: 20 YRVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRVFQS-TAQGD 78 Query: 64 SYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTK 123 AI ++++ + ++ I + + + Y + + Sbjct: 79 GTVKAAIAVFDHDLDVIQYPQLTTNNIVVVGIRTRA----WEITLVSYYFEP-DKPIESY 133 Query: 124 YDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSF 183 + ++ LIF GD N + TL Sbjct: 134 LEQIKRVERKMGPK---------RLIFGGDANAKSTWWGSKEDDARGDQLMGTLGELG-- 182 Query: 184 QKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDT 243 + + +F K R+D + + L+ R+D Sbjct: 183 ------------LHILNEGDVPTFDTIR---GGKRYQSRVDVTFCTEDMLDLIDGWRVDE 227 Query: 244 KPRGWTKPSDHTPVIVSLDI 263 SDH ++ ++ + Sbjct: 228 DLV----SSDHNGMVFNIRL 243 >2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} (X:) Length = 282 Score = 102 bits (255), Expect = 4e-23 Identities = 33/283 (11%), Positives = 79/283 (27%), Gaps = 32/283 (11%) Query: 4 VTVATWNVNSIRAR--IHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLN------- 54 V +WN RA + L PD+I + + + + Sbjct: 9 VHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLL 68 Query: 55 ----YHIETCGQKSYNGVAILSKYQPIEIVTHL-----PGDDLDVQARFIEATFTINTQT 105 Y G+ + + ++ T D ++ I +FTI + Sbjct: 69 TSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVTSFTIYNKR 128 Query: 106 LRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDC-- 163 + + + L + S++ + + L + GD N+ + + Sbjct: 129 FSFTTSRMSDED----VTSTNTKYAYDTRLDY-SKKDDPSDFLFWIGDLNVRVETNATHA 183 Query: 164 --YNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGI 221 + +++++ ++ G+T+ T+ D Y Sbjct: 184 KSLVDQNNIDGLMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEY---DLSATPS 240 Query: 222 RIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDIP 264 D + + + K ++H PV+ + Sbjct: 241 WTDRALYKS--GTGKTIQPLSYNSLTNYKQTEHRPVLAKFRVT 281 >2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} (A:) Length = 306 Score = 99.0 bits (244), Expect = 6e-22 Identities = 41/309 (13%), Positives = 90/309 (29%), Gaps = 62/309 (20%) Query: 4 VTVATWNVNSIRA----------RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSL 53 + V T NV + R + A N D++ L E + Sbjct: 10 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKK 69 Query: 54 NYHIET-------------------CGQKSYNGVAILSKYQPIEIVTHLP----GDDLDV 90 Y +T GVAI+SK+ E + ++ G D Sbjct: 70 EYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLS 129 Query: 91 QARFIEATFTINTQTLRIGNLYLPHG--NPITSTKYDDKISWIKRFLRF-ASQRLELEEP 147 F+ N + + + +L ++ + + +K F ++ + E Sbjct: 130 NKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEY 189 Query: 148 LIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSF 207 ++ GD N+ + N + + + + H + Sbjct: 190 VLIGGDMNVNKINAENNNDSEYASMFKT-------------LNASVPSYTGHTATWDATT 236 Query: 208 WDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRG-------------WTKPSDH 254 ++ + +D+I+ S + + + +P+ + SDH Sbjct: 237 NSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDH 296 Query: 255 TPVIVSLDI 263 PV ++ + Sbjct: 297 YPVEATISM 305 >1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} (A:18-321) Length = 304 Score = 93.6 bits (231), Expect = 2e-20 Identities = 29/301 (9%), Positives = 62/301 (20%), Gaps = 51/301 (16%) Query: 4 VTVATWNVNSIRA--RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIE--- 58 + VA++N+N A ++ N DI + + E Sbjct: 10 IFVASYNLNGCSATTKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWES 69 Query: 59 -------------------TCGQKSYNGVAILSKYQPIEIVTHLPGDDLDV-------QA 92 GQ + I K + + ++ G Sbjct: 70 CVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGNK 129 Query: 93 RFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAG 152 + F L +L G + D + + + + +++ G Sbjct: 130 GAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWFG 189 Query: 153 DYNIIP--------QPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATH-DTHH 203 D+N ++ T+ Sbjct: 190 DFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDIG 249 Query: 204 LYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDI 263 + + L P + SDH P+ + + Sbjct: 250 TDIYDTSDKHRVPAWTDRILYRGELVPHSYQ-----------SVPLYYSDHRPIYATYEA 298 Query: 264 P 264 Sbjct: 299 N 299 >2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major} (A:135-232,A:440-467) Length = 126 Score = 79.3 bits (195), Expect = 5e-16 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 9/82 (10%) Query: 5 TVATWNVNSIRARI----HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLN-----Y 55 TWNV +R + L A+++ PD++CLQETK + Sbjct: 17 KFITWNVAGLRGLLKKNASALRAFMEAEKPDVLCLQETKLNVDEADANATLGVVDGYSFV 76 Query: 56 HIETCGQKSYNGVAILSKYQPI 77 ++ Y+G K Sbjct: 77 DHPCAFKRGYSGTRTYMKNSTT 98 >3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, ATP-binding, cytoplasm, hydrolase, membrane; 2.80A {Schizosaccharomyces pombe} (A:1-326) Length = 326 Score = 28.2 bits (62), Expect = 1.4 Identities = 11/91 (12%), Positives = 20/91 (21%), Gaps = 26/91 (28%) Query: 172 DACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPE 231 + ++ L G D RI H +L Sbjct: 258 RDIKVFVLDEADNMLDQQGLGDQSM-------------------------RIKH-LLPRN 291 Query: 232 ATSLLHSARIDTKPRGWTKPSDHTPVIVSLD 262 +L SA + + + + L Sbjct: 292 TQIVLFSATFSERVEKYAERFAPNANEIRLK 322 >2efk_A CDC42-interacting protein 4; EFC domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.30A {Homo sapiens} (A:) Length = 301 Score = 26.8 bits (58), Expect = 3.2 Identities = 6/38 (15%), Positives = 16/38 (42%) Query: 109 GNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEE 146 G+ + + + R+++F +R E+E+ Sbjct: 1 GSSGSSGQFEVLERHTQWGLDLLDRYVKFVKERTEVEQ 38 >2w1v_A Nitrilase-2, nitrilase homolog 2; hydrolase; 1.49A {Mus musculus} (A:) Length = 276 Score = 26.2 bits (56), Expect = 4.5 Identities = 8/44 (18%), Positives = 15/44 (34%), Gaps = 6/44 (13%) Query: 1 MSVVTVA------TWNVNSIRARIHNLAAWIKENNPDIICLQET 38 MS +A + + R +L + +I+ L E Sbjct: 1 MSTFRLALIQLQVSSIKSDNLTRACSLVREAAKQGANIVSLPEC 44 >2gia_A Mitochondrial RNA-binding protein 2; T. brucei, guide RNA, matchmaking, RNA editing, translation; 1.89A {Trypanosoma brucei TREU927} (A:101-195) Length = 95 Score = 25.1 bits (54), Expect = 9.9 Identities = 19/76 (25%), Positives = 32/76 (42%), Gaps = 8/76 (10%) Query: 86 DDLDVQARFIEATFTIN-----TQTLRIGNLYLPHG-NPITSTKYDDKISWIKRFLRFAS 139 + ++V +R+ ATFT N T TL+ + + + D+ W F + Sbjct: 14 EKVEVHSRYTNATFTPNPAAPYTFTLKCTSTRPAQQKQQVAGEEGDETFEWTVEF--DVA 71 Query: 140 QRLELEEPLIFAGDYN 155 + L L+ L A YN Sbjct: 72 ESLMLQRFLTQALHYN 87 Database: mmdb70 Posted date: Jun 20, 2010 3:12 AM Number of letters in database: 4,956,049 Number of sequences in database: 33,805 Lambda K H 0.319 0.134 0.419 Gapped Lambda K H 0.267 0.0355 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 33805 Number of Hits to DB: 2,234,946 Number of extensions: 100357 Number of successful extensions: 318 Number of sequences better than 10.0: 1 Number of HSP's gapped: 273 Number of HSP's successfully gapped: 29 Length of query: 281 Length of database: 4,956,049 Length adjustment: 87 Effective length of query: 194 Effective length of database: 2,015,014 Effective search space: 390912716 Effective search space used: 390912716 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 54 (25.6 bits)