RPSBLAST alignment of GI: 254780288 and protein with PDBid: 1sr4
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Length = 261
Score = 89.4 bits (220), Expect = 9e-19
Identities = 35/297 (11%), Positives = 64/297 (21%), Gaps = 73/297 (24%)
Query: 1 MSVVTVATWNVNSIRA------RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLN 54
+S VATWN+ A I+ E DI+ +QE + + + +
Sbjct: 2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQH 61
Query: 55 YHIETCG-----------------------QKSYNGVAILSKYQPIEIVTHLPGDDLDVQ 91
+ +AI+S+ Q E +
Sbjct: 62 GGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQS 121
Query: 92 ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
+ T ++ + I F +S +
Sbjct: 122 RPAVGIRI----GTDVFFTVHALATGGSDAVSLIRNIFT--TFNSSSSPPERRVYSWMVV 175
Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211
GD+N + + +
Sbjct: 176 GDFN--------------------------------RAPANLEVALRQEPAVSENTIIIA 203
Query: 212 ADSWSKNKGIRIDHIMLSPE------ATSLLHSARIDTKPRGWTKPSDHTPVIVSLD 262
+ G +D+ +L A + SDH PV D
Sbjct: 204 PTEPTHRSGNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVRD 260