RPSBLAST alignment of GI: 254780288 and protein with PDBid: 1sr4

>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B Length = 261
 Score = 89.4 bits (220), Expect = 9e-19
 Identities = 35/297 (11%), Positives = 64/297 (21%), Gaps = 73/297 (24%)

Query: 1   MSVVTVATWNVNSIRA------RIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLN 54
           +S   VATWN+    A       I+       E   DI+ +QE  +   +    +    +
Sbjct: 2   LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQH 61

Query: 55  YHIETCG-----------------------QKSYNGVAILSKYQPIEIVTHLPGDDLDVQ 91
                                           +   +AI+S+ Q  E         +   
Sbjct: 62  GGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQS 121

Query: 92  ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
              +         T     ++        +      I     F   +S         +  
Sbjct: 122 RPAVGIRI----GTDVFFTVHALATGGSDAVSLIRNIFT--TFNSSSSPPERRVYSWMVV 175

Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211
           GD+N                                       +    +     +     
Sbjct: 176 GDFN--------------------------------RAPANLEVALRQEPAVSENTIIIA 203

Query: 212 ADSWSKNKGIRIDHIMLSPE------ATSLLHSARIDTKPRGWTKPSDHTPVIVSLD 262
               +   G  +D+ +L                A +          SDH PV    D
Sbjct: 204 PTEPTHRSGNILDYAILHDAHLPRREQARERIGASLMLNQLRSQITSDHFPVSFVRD 260