RPSBLAST alignment of GI: 254780288 and protein with PDBid: 1vyb
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A Length = 238
Score = 105 bits (261), Expect = 1e-23
Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 32/262 (12%)
Query: 2 SVVTVATWNVNSIRARI--HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET 59
S +T+ T N+N + + I H LA+WIK +P + C+QET ++ ++ +
Sbjct: 6 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA 65
Query: 60 CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
G++ GVAIL + T D + +I +I + L I N+Y P+
Sbjct: 66 NGKQKKAGVAILVSDKTDFKPT---KIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 122
Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
K + GD+N D D
Sbjct: 123 RFIKQVLSDLQRDLDSHT-----------LIMGDFNTPLSTLDRSTRQKVNKD------T 165
Query: 180 RQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239
++ L D R H Y+F+ ++S +IDHI+ S S
Sbjct: 166 QELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYS-----KIDHIVGSKALLSKCKRT 220
Query: 240 RIDTKPRGWTKPSDHTPVIVSL 261
I SDH+ + + L
Sbjct: 221 EII-----TNYLSDHSAIKLEL 237