RPSBLAST alignment of GI: 254780288 and protein with PDBid: 2ei9

>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori} Length = 240

 Score = 81.9 bits (201), Expect = 2e-16
 Identities = 27/279 (9%), Positives = 69/279 (24%), Gaps = 53/279 (18%)

Query: 5   TVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKS 64
            +   N+         L +  ++   DI+ +QE  +                       +
Sbjct: 9   RIGQINLGGAEDATRELPSIARDLGLDIVLVQEQYS--------------MVGFLAQCGA 54

Query: 65  YNGVAILSKY--QPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITST 122
           +    +  +    P  ++ HL    + V          I    L + + Y  + +PI   
Sbjct: 55  HPKAGVYIRNRVLPCAVLHHLSSTHITV--------VHIGGWDLYMVSAYFQYSDPI--- 103

Query: 123 KYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQS 182
             D  +  +   L            ++   D N                         + 
Sbjct: 104 --DPYLHRLGNILDRLR-----GARVVICADTNAHSPLWHSLPRHYVGRGQEVADRRAKM 156

Query: 183 FQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARID 242
              +            H                + N    +D  + +      +   R+ 
Sbjct: 157 EDFIGARRLVVHNADGHLPTF-----------STANGESYVDVTLSTRGV--RVSEWRVT 203

Query: 243 TKPRGWTKPSDHTPVIVSLDIPEPRKK-QQDSTSQNMKP 280
            +       SDH  ++  +      ++ + +    +++P
Sbjct: 204 NES-----SSDHRLIVFGVGGGTTGERDEDEEARSDLRP 237