RPSBLAST alignment of GI: 254780288 and protein with PDBid: 2f1n
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1 Length = 262
Score = 109 bits (273), Expect = 5e-25
Identities = 36/292 (12%), Positives = 65/292 (22%), Gaps = 74/292 (25%)
Query: 1 MSVVTVATWNVNSIRARIHN------LAAWIKENNPDIICLQETKTEDKNFPFE------ 48
++ VATWN+ A + EN DI+ +QE +
Sbjct: 13 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPS 72
Query: 49 -----------------TLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQ 91
Q Y +A++S + E+ P
Sbjct: 73 PGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQGGRP 132
Query: 92 ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
I + + +++ F R + + +
Sbjct: 133 LLGIR------IGNDAFFTAHAIAMRNNDAPALVEEVYN---FFRDSRDPVHQALNWMIL 183
Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211
GD+N P + +
Sbjct: 184 GDFNREPADLEMN----------------------------------LTVPVRRASEIIS 209
Query: 212 ADSWSKNKGIRIDHIMLSPEATSLLH--SARIDTKPRGWTKPSDHTPVIVSL 261
+ ++ +D+ + A I R SDH PV VS
Sbjct: 210 PAAATQTSQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVSR 261