RPS-BLAST 2.2.22 [Sep-27-2009]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III
protein [Candidatus Liberibacter asiaticus str. psy62]
(281 letters)
>d1akoa_ d.151.1.1 (A:) DNA-repair enzyme exonuclease III
{Escherichia coli [TaxId: 562]}
Length = 268
Score = 166 bits (421), Expect = 1e-42
Identities = 80/264 (30%), Positives = 123/264 (46%), Gaps = 8/264 (3%)
Query: 6 VATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKSY 65
++N+N +RAR H L A ++++ PD+I LQETK D FP E + L Y++ GQK +
Sbjct: 3 FVSFNINGLRARPHQLEAIVEKHQPDVIGLQETKVHDDMFPLEEVAKLGYNVFYHGQKGH 62
Query: 66 NGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGN-PITSTKY 124
GVA+L+K PI + PGDD + Q R I A + + N Y P G K+
Sbjct: 63 YGVALLTKETPIAVRRGFPGDDEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKF 122
Query: 125 DDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYN------PIIWENDACFTLE 178
K + + + L+ + P++ GD NI P D + F E
Sbjct: 123 PAKAQFYQNLQNYLETELKRDNPVLIMGDMNISPTDLDIGIGEENRKRWLRTGKCSFLPE 182
Query: 179 VRQSFQKLQNMGFTDAIRATHDTH-HLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLH 237
R+ +L + G D R + +S++DY + + N+G+RID ++ S
Sbjct: 183 EREWMDRLMSWGLVDTFRHANPQTADRFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCV 242
Query: 238 SARIDTKPRGWTKPSDHTPVIVSL 261
ID + R KPSDH PV +
Sbjct: 243 ETGIDYEIRSMEKPSDHAPVWATF 266
>d1hd7a_ d.151.1.1 (A:) DNA repair endonuclease Hap1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 275
Score = 141 bits (355), Expect = 6e-35
Identities = 73/265 (27%), Positives = 119/265 (44%), Gaps = 17/265 (6%)
Query: 6 VATWNVNSIRARIHN-LAAWIKENNPDIICLQETKTEDKNFPFETLQSLN----YHIETC 60
+ +WNV+ +RA I W+KE PDI+CLQETK + P E + Y
Sbjct: 21 ICSWNVDGLRAWIKKKGLDWVKEEAPDILCLQETKCSENKLPAELQELPGLSHQYWSAPS 80
Query: 61 GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120
++ Y+GV +LS+ P+++ + ++ D + R I A F G +
Sbjct: 81 DKEGYSGVGLLSRQCPLKVSYGIGDEEHDQEGRVIVAEFDSFVLVTAY---VPNAGRGLV 137
Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180
+Y + R +PL+ GD N+ + D NP + +A FT + R
Sbjct: 138 RLEYRQRWDEAFRKFLKGLAS---RKPLVLCGDLNVAHEEIDLRNPKGNKKNAGFTPQER 194
Query: 181 QSF-QKLQNMGFTDAIRATHDTH-HLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHS 238
Q F + LQ + D+ R + + Y+FW Y ++ SKN G R+D+ +LS L
Sbjct: 195 QGFGELLQAVPLADSFRHLYPNTPYAYTFWTYMMNARSKNVGWRLDYFLLSHSLLPALCD 254
Query: 239 ARIDTKPRGWTKPSDHTPVIVSLDI 263
++I R SDH P+ + L +
Sbjct: 255 SKI----RSKALGSDHCPITLYLAL 275
>d2imqx1 d.151.1.2 (X:3-282) Salivary nitrophorin {Bedbug (Cimex
lectularius) [TaxId: 79782]}
Length = 280
Score = 123 bits (308), Expect = 2e-29
Identities = 30/284 (10%), Positives = 72/284 (25%), Gaps = 36/284 (12%)
Query: 4 VTVATWNVNSIRAR--IHNLAAWIKENNPDI--ICLQETKTEDKNFPFE---------TL 50
V +WN RA + L PD+ + +Q + L
Sbjct: 7 VHTVSWNSGHERAPTNLEELLGLNSGETPDVIAVAVQGFGFQTDKPQQGPACVKNFQSLL 66
Query: 51 QSLNYHIETCGQKSYNGVAILSKY-------QPIEIVTHLPGDDLDVQARFIEATFTINT 103
S Y G+ + E + D +FTI
Sbjct: 67 TSKGYTKLKNTITETMGLTVYCLEKHLDQNTLKNETIIVTVDDQKKSGGIVT--SFTIYN 124
Query: 104 QTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDC 163
+ + + + S++ + + L + GD N+ + +
Sbjct: 125 KRFSFTTSRMSDED-----VTSTNTKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVETNAT 179
Query: 164 YNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRI 223
+ + + + +F +L+ + + + + +
Sbjct: 180 HAKSLVDQNNIDG---LMAFDQLKKAKEQKLFDGWTEPQVTFKPTYKFKPNTDEYDLSAT 236
Query: 224 ----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDI 263
D + + ++ K ++H PV+ +
Sbjct: 237 PSWTDRALYKSGTGKTIQPLSYNS--LTNYKQTEHRPVLAKFRV 278
>d2f1na1 d.151.1.1 (A:1-250) Cytolethal distending toxin subunit B
{Escherichia coli [TaxId: 562]}
Length = 250
Score = 120 bits (301), Expect = 1e-28
Identities = 36/291 (12%), Positives = 65/291 (22%), Gaps = 74/291 (25%)
Query: 1 MSVVTVATWNVNSIRARIHN------LAAWIKENNPDIICLQETKTEDKNFPFETLQSLN 54
++ VATWN+ A + EN DI+ +QE + +
Sbjct: 2 LTDFRVATWNLQGASATTESKWNINVRQLISGENAVDILAVQEAGSPPSTAVDTGRVIPS 61
Query: 55 -----------------------YHIETCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQ 91
Y +A++S + E+ P
Sbjct: 62 PGIPVRELIWNLSTNSRPQQVYIYFSAVDALGGRVNLALVSNRRADEVFVLSPVRQGGRP 121
Query: 92 ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
I + + + + F R + + +
Sbjct: 122 L------LGIRIGNDAFFTAHAIAMRNNDAPAL---VEEVYNFFRDSRDPVHQALNWMIL 172
Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211
GD+N P + + A
Sbjct: 173 GDFNREP----------------------ADLEMNLTVPVRRASEIISPA---------- 200
Query: 212 ADSWSKNKGIRIDHIMLSPEATSLLH--SARIDTKPRGWTKPSDHTPVIVS 260
+ ++ +D+ + A I R SDH PV VS
Sbjct: 201 --AATQTSQRTLDYAVAGNSVAFRPSPLQAGIVYGARRTQISSDHFPVGVS 249
>d1vyba_ d.151.1.1 (A:) Endonuclease domain of LINE-1 reverse
transcriptase homolog {Human (Homo sapiens) [TaxId:
9606]}
Length = 236
Score = 106 bits (265), Expect = 2e-24
Identities = 56/262 (21%), Positives = 92/262 (35%), Gaps = 32/262 (12%)
Query: 2 SVVTVATWNVNSIRARI--HNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIET 59
S +T+ T N+N + + I H LA+WIK +P + C+QET ++ ++ +
Sbjct: 4 SHITILTLNINGLNSAIKRHRLASWIKSQDPSVCCIQETHLTCRDTHRLKIKGWRKIYQA 63
Query: 60 CGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPI 119
G++ GVAIL + T D + +I +I + L I N+Y P+
Sbjct: 64 NGKQKKAGVAILVSDKTDFKPT---KIKRDKEGHYIMVKGSIQQEELTILNIYAPNTGAP 120
Query: 120 TSTKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEV 179
K + GD+N D D
Sbjct: 121 RFIKQVLSDLQRDLDSHT-----------LIMGDFNTPLSTLDRSTRQKVNKD------T 163
Query: 180 RQSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSA 239
++ L D R H Y+F+ ++S +IDHI+ S S
Sbjct: 164 QELNSALHQADLIDIYRTLHPKSTEYTFFSAPHHTYS-----KIDHIVGSKALLSKCKRT 218
Query: 240 RIDTKPRGWTKPSDHTPVIVSL 261
I SDH+ + + L
Sbjct: 219 EII-----TNYLSDHSAIKLEL 235
>d1i9za_ d.151.1.2 (A:) Synaptojanin, IPP5C domain {Fission yeast
(Schizosaccharomyces pombe) [TaxId: 4896]}
Length = 345
Score = 105 bits (263), Expect = 4e-24
Identities = 41/309 (13%), Positives = 78/309 (25%), Gaps = 49/309 (15%)
Query: 4 VTVATWNVNSIRARIHNLAAWI---KENNPDI--ICLQE--------------------T 38
+ VA++N+N A L W+ DI + QE
Sbjct: 27 IFVASYNLNGCSAT-TKLENWLFPENTPLADIYVVGFQEIVQLTPQQVISADPAKRREWE 85
Query: 39 KTEDKNFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGD-------DLDVQ 91
+ + Y GQ + I K + + ++ G +
Sbjct: 86 SCVKRLLNGKCTSGPGYVQLRSGQLVGTALMIFCKESCLPSIKNVEGTVKKTGLGGVSGN 145
Query: 92 ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
+ F L +L G + D + + + + +++
Sbjct: 146 KGAVAIRFDYEDTGLCFITSHLAAGYTNYDERDHDYRTIASGLRFRRGRSIFNHDYVVWF 205
Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHD-THHLYSFWDY 210
GD+N L K G + T +D
Sbjct: 206 GDFNYRISLTYEEVVPCIAQGKLSYLFEYDQLNKQMLTGKVFPFFSELPITFPPTYKFDI 265
Query: 211 YADSWSKNKGIRI----DHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVI----VSLD 262
D + + R+ D I+ E + SDH P+ ++
Sbjct: 266 GTDIYDTSDKHRVPAWTDRILYRGELVPHSYQ-------SVPLYYSDHRPIYATYEANIV 318
Query: 263 IPEPRKKQQ 271
+ KK+
Sbjct: 319 KVDREKKKI 327
>d1sr4b_ d.151.1.1 (B:) Cytolethal distending toxin subunit B
{Haemophilus ducreyi [TaxId: 730]}
Length = 261
Score = 95.3 bits (235), Expect = 5e-21
Identities = 37/291 (12%), Positives = 65/291 (22%), Gaps = 61/291 (20%)
Query: 1 MSVVTVATWNVNSIRA------RIHNLAAWIKENNPDIICLQETKTEDKNFPFE------ 48
+S VATWN+ A I+ E DI+ +QE + +
Sbjct: 2 LSDFKVATWNLQGSSAVNESKWNINVRQLLSGEQGADILMVQEAGSLPSSAVRTSRVIQH 61
Query: 49 -----------------TLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGDDLDVQ 91
Y+ + +AI+S+ Q E +
Sbjct: 62 GGTPIEEYTWNLGTRSRPNMVYIYYSRLDVGANRVNLAIVSRRQADEAFIVHSDSSVLQS 121
Query: 92 ARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLELEEPLIFA 151
+ T ++ + I F +S +
Sbjct: 122 RPAVGIRI----GTDVFFTVHALATGGSDAVSLIRNIFT--TFNSSSSPPERRVYSWMVV 175
Query: 152 GDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWDYY 211
GD+N P Q ++ T +
Sbjct: 176 GDFNRAPA--------------------NLEVALRQEPAVSENTIIIAPTE--PTHRSGN 213
Query: 212 ADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLD 262
++ + + E A + SDH PV D
Sbjct: 214 ILDYAILHDAHLPRREQARERI----GASLMLNQLRSQITSDHFPVSFVRD 260
>d1wdua_ d.151.1.1 (A:) Endonuclease domain of TRAS1 retrotransposon
(ORF2) {Silkworm (Bombyx mori) [TaxId: 7091]}
Length = 228
Score = 89.0 bits (219), Expect = 5e-19
Identities = 31/259 (11%), Positives = 63/259 (24%), Gaps = 36/259 (13%)
Query: 5 TVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETCGQKS 64
V N+ + LA I +QE + G +
Sbjct: 4 RVLQANLQRKKLATAELAIEAATRKAAIALIQEPYVGGAKSMKGFRGVRVFQSTAQGDGT 63
Query: 65 YNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKY 124
+ + I + + + + + Y P
Sbjct: 64 VKAAIAVFDHDLDVIQYPQLTTN-----NIVVVGIRTRAWEITLVSYYFEPDKP-----I 113
Query: 125 DDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQ 184
+ + IKR R + LIF GD N
Sbjct: 114 ESYLEQIKRVERKMGPK-----RLIFGGDANAKSTWWGSKEDDAR-------------GD 155
Query: 185 KLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTK 244
+L + + + +F ++ R+D + + L+ R+D
Sbjct: 156 QLMGT-LGELGLHILNEGDVPTFDTIRGGKRYQS---RVDVTFCTEDMLDLIDGWRVDED 211
Query: 245 PRGWTKPSDHTPVIVSLDI 263
SDH ++ ++ +
Sbjct: 212 LVS----SDHNGMVFNIRL 226
>d2ddra1 d.151.1.3 (A:7-305) Sphingomyelin phosphodiesterase C
{Bacillus cereus [TaxId: 1396]}
Length = 299
Score = 85.1 bits (208), Expect = 6e-18
Identities = 41/298 (13%), Positives = 90/298 (30%), Gaps = 40/298 (13%)
Query: 4 VTVATWNVNSIRARIHN----------LAAWIKENNPDIICLQE--TKTEDKNFPFETLQ 51
+ V T NV + ++ + A N D++ L E + +
Sbjct: 4 LKVMTHNVYMLSTNLYPNWGQTERADLIGAADYIKNQDVVILNEVFDNSASDRLLGNLKK 63
Query: 52 SLNYHIETCGQKS-----------------YNGVAILSKYQPIEIVTHL----PGDDLDV 90
G+ S GVAI+SK+ E + ++ G D
Sbjct: 64 EYPNQTAVLGRSSGSEWDKTLGNYSSSTPEDGGVAIVSKWPIAEKIQYVFAKGCGPDNLS 123
Query: 91 QARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWI---KRFLRFASQRLELEEP 147
F+ N + + + +L + + + + ++ + E
Sbjct: 124 NKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFIKNKNIPNNEY 183
Query: 148 LIFAGDYNIIPQPHDCYNPIIWEN--DACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLY 205
++ GD N+ + N + + + T++I +
Sbjct: 184 VLIGGDMNVNKINAENNNDSEYASMFKTLNASVPSYTGHTATWDATTNSIAKYNFPDSPA 243
Query: 206 SFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPRGWTKPSDHTPVIVSLDI 263
+ DY S I++ +L P++ ++ + SDH PV ++ +
Sbjct: 244 EYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYT--YNDYSDHYPVEATISM 299
>d1zwxa1 d.151.1.3 (A:41-333) Sphingomyelin phosphodiesterase C
{Listeria ivanovii [TaxId: 1638]}
Length = 293
Score = 74.6 bits (181), Expect = 8e-15
Identities = 38/306 (12%), Positives = 75/306 (24%), Gaps = 66/306 (21%)
Query: 5 TVATWNVNSI----------RARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLN 54
+ + NV R +A N D++ L E +
Sbjct: 6 KITSHNVYLFSRNIYPNWGQMHRADLIAQADYMKNNDVVILNEAFDTSASHRLLNNLREM 65
Query: 55 YHIETC------------------GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQAR--- 93
Y +T GVA++S++ +E H+
Sbjct: 66 YPHQTPVIGRSKHGWDKTEGNYSNFALEDGGVAVVSQWPIVEKSQHIFQRGGGADRLSNK 125
Query: 94 -FIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKI---SWIKRFLRFASQRLELEEPLI 149
F N + I + + + S I + A + + +E +
Sbjct: 126 GFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIAKKNIPKDEIIF 185
Query: 150 FAGDYNIIPQPHDCYNPIIWENDACFTLEVRQSFQKLQNMGFTDAIRATHDTHHLYSFWD 209
GD N+ + ++ + N + A +
Sbjct: 186 IGGDLNVNYGTDEYHDMLKLLNVSS------------------PANFNGQMATWDPTTNS 227
Query: 210 YYADSWSKNKGIRIDHIMLSPEATSLLHSARIDTKPR-------------GWTKPSDHTP 256
+S+ K +D+I + + + SDH P
Sbjct: 228 MLKESYPKAAPEYLDYIFVENGHARPHSWHNKVLHTKSPQWSVKSWFKTYTYQDFSDHYP 287
Query: 257 VIVSLD 262
V+ D
Sbjct: 288 VVGFTD 293
>d2a40b1 d.151.1.1 (B:1-260) Deoxyribonuclease I {Cow (Bos taurus)
[TaxId: 9913]}
Length = 260
Score = 65.0 bits (156), Expect = 6e-12
Identities = 29/271 (10%), Positives = 68/271 (25%), Gaps = 29/271 (10%)
Query: 6 VATWNVNSI---RARIHNLAAWIKE--NNPDIICLQETKTEDKNFPFETLQSLNYHIETC 60
+A +N+ + + LA++I DI+ +QE + + L LN
Sbjct: 3 IAAFNIRTFGETKMSNATLASYIVRIVRRYDIVLIQEVRDSHLVAVGKLLDYLNQDDPNT 62
Query: 61 GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120
+ + Y+ + P + + + + +
Sbjct: 63 YHYVVSEPLGRNSYKERYLFLFRPNKVSVLDTYQYDDGCESCGNDSFSREPAVVKFSSHS 122
Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180
+ + I + A + + + +
Sbjct: 123 TKVKEFAIVALHSAPSDAVAEINSLYDVYLD-------VQQKWHLNDVMLMGDFNADCSY 175
Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSP---------- 230
+ + ++ + AD+ + + D I+++
Sbjct: 176 VTSSQWSSIRL-------RTSSTFQWLIPDSADTTATSTNCAYDRIVVAGSLLQSSVVPG 228
Query: 231 EATSLLHSARIDTKPRGWTKPSDHTPVIVSL 261
A A SDH PV V+L
Sbjct: 229 SAAPFDFQAAYGLSNEMALAISDHYPVEVTL 259
>d2auaa1 d.166.1.6 (A:2-195) Hypothetical protein BC2332 {Bacillus
cereus [TaxId: 1396]}
Length = 194
Score = 26.4 bits (58), Expect = 2.7
Identities = 10/45 (22%), Positives = 20/45 (44%), Gaps = 4/45 (8%)
Query: 124 YDDKISWIKRFLRFASQRLELEE----PLIFAGDYNIIPQPHDCY 164
Y+D + W F + + L++ + F GD N++P+
Sbjct: 112 YEDALKWKALFDSYNREVLQIVKLRVIGSSFEGDGNLLPKEDGIP 156
>d1o0ya_ c.1.10.1 (A:) Deoxyribose-phosphate aldolase DeoC
{Thermotoga maritima [TaxId: 2336]}
Length = 251
Score = 26.1 bits (57), Expect = 3.5
Identities = 8/30 (26%), Positives = 12/30 (40%)
Query: 204 LYSFWDYYADSWSKNKGIRIDHIMLSPEAT 233
Y F + ++ I+H L P AT
Sbjct: 20 FYEFKPVRESAGIEDVKSAIEHTNLKPFAT 49
>d2giaa1 d.18.1.4 (A:56-221) Guide RNA binding protein gBP25
{Trypanosoma brucei [TaxId: 5691]}
Length = 166
Score = 25.8 bits (56), Expect = 3.9
Identities = 23/117 (19%), Positives = 39/117 (33%), Gaps = 16/117 (13%)
Query: 53 LNYHIETC--GQKSYNGVAILSKYQPIEIVTHLPG------DDLDVQARFIEATFTINTQ 104
L+YH + ++ ++S P + ++V +R+ ATFT N
Sbjct: 47 LDYHRQARMLTEEGNKAERVVSVMLPAVYTARFLAVLEGRSEKVEVHSRYTNATFTPNPA 106
Query: 105 TLRIGNLYLPHGNPITSTK------YDDKISWIKRFLRFASQRLELEEPLIFAGDYN 155
L P + D+ W F ++ L L+ L A YN
Sbjct: 107 APYTFTLKCTSTRPAQQKQQVAGEEGDETFEWTVEF--DVAESLMLQRFLTQALHYN 161
>d1epwa3 d.92.1.7 (A:1-533) Botulinum neurotoxin {Clostridium
botulinum, serotype B [TaxId: 1491]}
Length = 533
Score = 25.6 bits (56), Expect = 5.4
Identities = 9/33 (27%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Query: 128 ISWIKRFLRFASQRLELEEPLIFAG-DYNIIPQ 159
+ K+F ++ ++ EE F G D +II
Sbjct: 249 VPNEKKFFMQSTDAIQAEELYTFGGQDPSIITP 281
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.319 0.134 0.419
Gapped
Lambda K H
0.267 0.0427 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,100,375
Number of extensions: 51027
Number of successful extensions: 218
Number of sequences better than 10.0: 1
Number of HSP's gapped: 180
Number of HSP's successfully gapped: 19
Length of query: 281
Length of database: 2,407,596
Length adjustment: 84
Effective length of query: 197
Effective length of database: 1,254,276
Effective search space: 247092372
Effective search space used: 247092372
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)