BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] (281 letters) Database: las_proteome 1233 sequences; 328,796 total letters Searching...................................................done >gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus str. psy62] Length = 281 Score = 588 bits (1516), Expect = e-170, Method: Compositional matrix adjust. Identities = 281/281 (100%), Positives = 281/281 (100%) Query: 1 MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC 60 MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC Sbjct: 1 MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC 60 Query: 61 GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120 GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT Sbjct: 61 GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120 Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR Sbjct: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180 Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR Sbjct: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240 Query: 241 IDTKPRGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKPI 281 IDTKPRGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKPI Sbjct: 241 IDTKPRGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKPI 281 >gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter asiaticus str. psy62] Length = 231 Score = 32.3 bits (72), Expect = 0.010, Method: Compositional matrix adjust. Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 41/203 (20%) Query: 4 VTVATWNVNSIRARIHNLAAW----IKENN-------------PDIICLQETKTED---K 43 + +A+WN+N++ + +A + I+E+N DI+CLQE + + + Sbjct: 7 IRIASWNINNLSEK-SGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65 Query: 44 NFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGD--DLDVQA---RFIEAT 98 FP + L T + + I + ++LP D LD +A R +E Sbjct: 66 VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125 Query: 99 FTINTQTLRIGNLYLPHGNPITSTKYDDKIS----------WIKRFLRFASQRLELEEPL 148 F ++ + + + +++L + S + D IS W+K+++ Q+ L P Sbjct: 126 FEVDGRKIWLLDIHLKSFCFLDSIE-DSYISSCYMLNLQATWLKQWV---DQKNNLNMPF 181 Query: 149 IFAGDYN-IIPQPHDCYNPIIWE 170 I AGD+N I H +W+ Sbjct: 182 IIAGDFNRKINHSHSGIKDELWQ 204 >gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 237 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 14/42 (33%), Positives = 20/42 (47%) Query: 70 ILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNL 111 +LS I + L G LD+Q FI+ T Q ++ G L Sbjct: 147 MLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGAL 188 >gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus Liberibacter asiaticus str. psy62] Length = 289 Score = 24.6 bits (52), Expect = 1.9, Method: Compositional matrix adjust. Identities = 12/49 (24%), Positives = 20/49 (40%) Query: 95 IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLE 143 I I LR+ +Y P NP + + + +K+ F R+E Sbjct: 142 ITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKKNQVFNRIRVE 190 >gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str. psy62] Length = 622 Score = 23.9 bits (50), Expect = 2.9, Method: Compositional matrix adjust. Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%) Query: 82 HLPGD--DLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFAS 139 LPG+ LD++ F+E +NT + ++ N T + +I + R+ + Sbjct: 229 RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGT 288 Query: 140 QRLELEEPLI 149 + +L P+I Sbjct: 289 DKPDLRNPII 298 Database: las_proteome Posted date: Jun 5, 2011 6:30 PM Number of letters in database: 328,796 Number of sequences in database: 1233 Lambda K H 0.319 0.134 0.419 Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 191,561 Number of Sequences: 1233 Number of extensions: 7829 Number of successful extensions: 15 Number of sequences better than 100.0: 7 Number of HSP's better than 100.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 9 Number of HSP's gapped (non-prelim): 7 length of query: 281 length of database: 328,796 effective HSP length: 73 effective length of query: 208 effective length of database: 238,787 effective search space: 49667696 effective search space used: 49667696 T: 11 A: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 38 (19.2 bits)