BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III
protein [Candidatus Liberibacter asiaticus str. psy62]
         (281 letters)

Database: las_proteome 
           1233 sequences; 328,796 total letters

Searching...................................................done



>gi|254780288|ref|YP_003064701.1| exodeoxyribonuclease III protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 281

 Score =  588 bits (1516), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 281/281 (100%), Positives = 281/281 (100%)

Query: 1   MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC 60
           MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC
Sbjct: 1   MSVVTVATWNVNSIRARIHNLAAWIKENNPDIICLQETKTEDKNFPFETLQSLNYHIETC 60

Query: 61  GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120
           GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT
Sbjct: 61  GQKSYNGVAILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNLYLPHGNPIT 120

Query: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180
           STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR
Sbjct: 121 STKYDDKISWIKRFLRFASQRLELEEPLIFAGDYNIIPQPHDCYNPIIWENDACFTLEVR 180

Query: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240
           QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR
Sbjct: 181 QSFQKLQNMGFTDAIRATHDTHHLYSFWDYYADSWSKNKGIRIDHIMLSPEATSLLHSAR 240

Query: 241 IDTKPRGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKPI 281
           IDTKPRGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKPI
Sbjct: 241 IDTKPRGWTKPSDHTPVIVSLDIPEPRKKQQDSTSQNMKPI 281


>gi|254780797|ref|YP_003065210.1| hypothetical protein CLIBASIA_03440 [Candidatus Liberibacter
           asiaticus str. psy62]
          Length = 231

 Score = 32.3 bits (72), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 46/203 (22%), Positives = 87/203 (42%), Gaps = 41/203 (20%)

Query: 4   VTVATWNVNSIRARIHNLAAW----IKENN-------------PDIICLQETKTED---K 43
           + +A+WN+N++  +   +A +    I+E+N              DI+CLQE  + +   +
Sbjct: 7   IRIASWNINNLSEK-SGVALFKNSVIREDNDYALLQKYAEQLDADIVCLQEIGSYEAIKR 65

Query: 44  NFPFETLQSLNYHIETCGQKSYNGVAILSKYQPIEIVTHLPGD--DLDVQA---RFIEAT 98
            FP +    L     T     +  + I      +   ++LP D   LD +A   R +E  
Sbjct: 66  VFPNDKWDILYSGSNTDKHAMHTAIVIRKGAIHLLQKSYLPMDTEGLDSKAGKRRAVEIL 125

Query: 99  FTINTQTLRIGNLYLPHGNPITSTKYDDKIS----------WIKRFLRFASQRLELEEPL 148
           F ++ + + + +++L     + S + D  IS          W+K+++    Q+  L  P 
Sbjct: 126 FEVDGRKIWLLDIHLKSFCFLDSIE-DSYISSCYMLNLQATWLKQWV---DQKNNLNMPF 181

Query: 149 IFAGDYN-IIPQPHDCYNPIIWE 170
           I AGD+N  I   H      +W+
Sbjct: 182 IIAGDFNRKINHSHSGIKDELWQ 204


>gi|254781111|ref|YP_003065524.1| geranyltranstransferase protein [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 237

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/42 (33%), Positives = 20/42 (47%)

Query: 70  ILSKYQPIEIVTHLPGDDLDVQARFIEATFTINTQTLRIGNL 111
           +LS    I +   L G  LD+Q  FI+ T     Q ++ G L
Sbjct: 147 MLSLTHNIGLQGMLGGQMLDIQDEFIDETQVFMIQKMKTGAL 188


>gi|254780595|ref|YP_003065008.1| nucleoside-diphosphate-sugar epimerase protein [Candidatus
           Liberibacter asiaticus str. psy62]
          Length = 289

 Score = 24.6 bits (52), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 12/49 (24%), Positives = 20/49 (40%)

Query: 95  IEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFASQRLE 143
           I     I    LR+  +Y P  NP    +  + +  +K+   F   R+E
Sbjct: 142 ITKKLNIKLAVLRLSGIYGPKRNPFIKIRQKNSLRLVKKNQVFNRIRVE 190


>gi|254780419|ref|YP_003064832.1| aspartyl-tRNA synthetase [Candidatus Liberibacter asiaticus str.
           psy62]
          Length = 622

 Score = 23.9 bits (50), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 16/70 (22%), Positives = 32/70 (45%), Gaps = 2/70 (2%)

Query: 82  HLPGD--DLDVQARFIEATFTINTQTLRIGNLYLPHGNPITSTKYDDKISWIKRFLRFAS 139
            LPG+   LD++  F+E    +NT    +  ++    N  T +    +I +     R+ +
Sbjct: 229 RLPGEFYQLDMEMSFVEQDDILNTMENVLRGVFEEFSNGNTVSNNFLRICYDDAIRRYGT 288

Query: 140 QRLELEEPLI 149
            + +L  P+I
Sbjct: 289 DKPDLRNPII 298


  Database: las_proteome
    Posted date:  Jun 5, 2011  6:30 PM
  Number of letters in database: 328,796
  Number of sequences in database:  1233
  
Lambda     K      H
   0.319    0.134    0.419 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 191,561
Number of Sequences: 1233
Number of extensions: 7829
Number of successful extensions: 15
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 7
length of query: 281
length of database: 328,796
effective HSP length: 73
effective length of query: 208
effective length of database: 238,787
effective search space: 49667696
effective search space used: 49667696
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 38 (19.2 bits)