HHsearch alignment for GI: 254780289 and conserved domain: COG2771

>COG2771 CsgD DNA-binding HTH domain-containing proteins [Transcription].
Probab=94.19  E-value=0.25  Score=29.49  Aligned_cols=58  Identities=26%  Similarity=0.373  Sum_probs=49.8

Q ss_pred             HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             329988999999981879867468899989966789999999999999832967778756651
Q gi|254780289|r  618 ASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFL  680 (682)
Q Consensus       618 ~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~~~~  680 (682)
T Consensus         3 ~~Lt~rE~~~~~l~~---~G--~s~~eia~~l~is~~tV~~h~~~i~~Kl~~~~r~~~~~~~~   60 (65)
T COG2771           3 ADLTPREREILRLVA---QG--KSNKEIARILGISEETVKTHLRNIYRKLGVKNRVELVALAL   60 (65)
T ss_pred             CCCCHHHHHHHHHHH---CC--CCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf             113888999999998---69--98999999987799999999999999977586999999999