HHsearch alignment for GI: 254780289 and conserved domain: COG4566
>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=92.92 E-value=0.8 Score=25.46 Aligned_cols=68 Identities=21% Similarity=0.304 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 9999999997329988999999981879867468899989966789999999999999832967778756651
Q gi|254780289|r 608 NLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFL 680 (682)
Q Consensus 608 ~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~~~~ 680 (682)
T Consensus 131 ~~~~~~~~~l~tLT~RERqVl~~vV-----~G~~NKqIA~dLgiS~rTVe~HRanvM~Km~a~SlaeLvr~a~ 198 (202)
T COG4566 131 DRQAAIRARLATLTPRERQVLDLVV-----RGLMNKQIAFDLGISERTVELHRANVMEKMQARSLAELVRMAL 198 (202)
T ss_pred HHHHHHHHHHHHCCHHHHHHHHHHH-----CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf 7899999999866988999999998-----3763089999839866459999999999973331999999998