HHsearch alignment for GI: 254780289 and conserved domain: COG4566

>COG4566 TtrR Response regulator [Signal transduction mechanisms].
Probab=92.92  E-value=0.8  Score=25.46  Aligned_cols=68  Identities=21%  Similarity=0.304  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf             9999999997329988999999981879867468899989966789999999999999832967778756651
Q gi|254780289|r  608 NLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFL  680 (682)
Q Consensus       608 ~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~~~~  680 (682)
T Consensus       131 ~~~~~~~~~l~tLT~RERqVl~~vV-----~G~~NKqIA~dLgiS~rTVe~HRanvM~Km~a~SlaeLvr~a~  198 (202)
T COG4566         131 DRQAAIRARLATLTPRERQVLDLVV-----RGLMNKQIAFDLGISERTVELHRANVMEKMQARSLAELVRMAL  198 (202)
T ss_pred             HHHHHHHHHHHHCCHHHHHHHHHHH-----CCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_conf             7899999999866988999999998-----3763089999839866459999999999973331999999998