HHsearch alignment for GI: 254780289 and conserved domain: PRK05572
>PRK05572 sporulation sigma factor SigF; Validated.
Probab=100.00 E-value=0 Score=448.79 Aligned_cols=235 Identities=29% Similarity=0.452 Sum_probs=210.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHH
Q ss_conf 11268899999987653321124689998755578999887522356777887544367999988743854573120102
Q gi|254780289|r 421 GISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYA 500 (682)
Q Consensus 421 gl~i~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya 500 (682)
T Consensus 11 ~Ls~eee~~L~~~~~~Gd~---~Ar~~Li~~nlrLV~siA~ry~~~g~~~~DLiQeG~iGLi~A~ekFDp~~G~rFsTYA 87 (251)
T PRK05572 11 QLKDEENKELIKKAQDGDK---EARDKLVEKNLRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKAVDKFDLSYDVKFSTYA 87 (251)
T ss_pred CCCHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf 9999999999999980799---9999999985999999998775899998899999999999996225989898402200
Q ss_pred HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 89899999999972287046142058898999999999877608899978999870999899999998608987553635
Q gi|254780289|r 501 MWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPI 580 (682)
Q Consensus 501 ~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~ 580 (682)
T Consensus 88 ~~wIr~~I~~~ir~~~-~irvp~~~~~~~~ki~~~~~~l~~~~~r~ps~~eia~~lg~~~~~v~~~~~~~~~~~sl~~~~ 166 (251)
T PRK05572 88 VPMIIGEIQRFLRDDG-IIKVSRSLKELANKIRKDKEELSKELGRAPTIEELAEYLGVTPEEVVLAQEASRSPQSIHETV 166 (251)
T ss_pred HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf 9999999999998578-766868899999889999999999878899899999997939999999998817987534666
Q ss_pred CCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf 889986--047562389889989999999999999999732998899999998187986746889998996678999999
Q gi|254780289|r 581 GDEDTS--HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQ 658 (682)
Q Consensus 581 ~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rq 658 (682)
T Consensus 167 ~~~d~~~~~l~d~~~~~~~~--~~~~~----~~~L~~~l~~L~~rEr~Vi~~ry~----~~~tl~EIa~~lgiS~eRVrQ 236 (251)
T PRK05572 167 HENDGDPITLLDQIADQSEE--DDWFD----KIALKEAIRELDERERLIIYLRYF----KDKTQSEVAKRLGISQVQVSR 236 (251)
T ss_pred CCCCCCHHHHHHHCCCCCHH--HHHHH----HHHHHHHHHCCCHHHHHHHHHHHC----CCCCHHHHHHHHCCCHHHHHH
T ss_conf 67899715665412687346--89999----999999997289999999999817----898899999997979999999
Q ss_pred HHHHHHHHHCC
Q ss_conf 99999998329
Q gi|254780289|r 659 IEAKAIRKLKH 669 (682)
Q Consensus 659 i~~~a~~~l~~ 669 (682)
T Consensus 237 I~~~Al~kLR~ 247 (251)
T PRK05572 237 LEKKILKQMKE 247 (251)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999