HHsearch alignment for GI: 254780289 and conserved domain: PRK05572

>PRK05572 sporulation sigma factor SigF; Validated.
Probab=100.00  E-value=0  Score=448.79  Aligned_cols=235  Identities=29%  Similarity=0.452  Sum_probs=210.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHH
Q ss_conf             11268899999987653321124689998755578999887522356777887544367999988743854573120102
Q gi|254780289|r  421 GISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYA  500 (682)
Q Consensus       421 gl~i~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya  500 (682)
T Consensus        11 ~Ls~eee~~L~~~~~~Gd~---~Ar~~Li~~nlrLV~siA~ry~~~g~~~~DLiQeG~iGLi~A~ekFDp~~G~rFsTYA   87 (251)
T PRK05572         11 QLKDEENKELIKKAQDGDK---EARDKLVEKNLRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKAVDKFDLSYDVKFSTYA   87 (251)
T ss_pred             CCCHHHHHHHHHHHHCCCH---HHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHH
T ss_conf             9999999999999980799---9999999985999999998775899998899999999999996225989898402200


Q ss_pred             HHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCC
Q ss_conf             89899999999972287046142058898999999999877608899978999870999899999998608987553635
Q gi|254780289|r  501 MWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPI  580 (682)
Q Consensus       501 ~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~  580 (682)
T Consensus        88 ~~wIr~~I~~~ir~~~-~irvp~~~~~~~~ki~~~~~~l~~~~~r~ps~~eia~~lg~~~~~v~~~~~~~~~~~sl~~~~  166 (251)
T PRK05572         88 VPMIIGEIQRFLRDDG-IIKVSRSLKELANKIRKDKEELSKELGRAPTIEELAEYLGVTPEEVVLAQEASRSPQSIHETV  166 (251)
T ss_pred             HHHHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCC
T ss_conf             9999999999998578-766868899999889999999999878899899999997939999999998817987534666


Q ss_pred             CCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHH
Q ss_conf             889986--047562389889989999999999999999732998899999998187986746889998996678999999
Q gi|254780289|r  581 GDEDTS--HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQ  658 (682)
Q Consensus       581 ~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rq  658 (682)
T Consensus       167 ~~~d~~~~~l~d~~~~~~~~--~~~~~----~~~L~~~l~~L~~rEr~Vi~~ry~----~~~tl~EIa~~lgiS~eRVrQ  236 (251)
T PRK05572        167 HENDGDPITLLDQIADQSEE--DDWFD----KIALKEAIRELDERERLIIYLRYF----KDKTQSEVAKRLGISQVQVSR  236 (251)
T ss_pred             CCCCCCHHHHHHHCCCCCHH--HHHHH----HHHHHHHHHCCCHHHHHHHHHHHC----CCCCHHHHHHHHCCCHHHHHH
T ss_conf             67899715665412687346--89999----999999997289999999999817----898899999997979999999


Q ss_pred             HHHHHHHHHCC
Q ss_conf             99999998329
Q gi|254780289|r  659 IEAKAIRKLKH  669 (682)
Q Consensus       659 i~~~a~~~l~~  669 (682)
T Consensus       237 I~~~Al~kLR~  247 (251)
T PRK05572        237 LEKKILKQMKE  247 (251)
T ss_pred             HHHHHHHHHHH
T ss_conf             99999999999