HHsearch alignment for GI: 254780289 and conserved domain: PRK05572
>PRK05572 sporulation sigma factor SigF; Validated.
Probab=94.89 E-value=0.031 Score=36.61 Aligned_cols=59 Identities=20% Similarity=0.159 Sum_probs=39.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHH-------HHHHHHHCCCHHHHHHHHHH
Q ss_conf 9768897889999999998899999998728--23899999-------99987311710367876421
Q gi|254780289|r 130 SIELLSREGEIAIAKRIEAGRAMMMASLCES--PLTFQALI-------IWRDELNDGTTLLREIIDLE 188 (682)
Q Consensus 130 ~V~LLTREgEIeIAKRIE~G~~~i~~al~~~--P~ti~~il-------~~~e~i~~ge~~LrdIIDld 188 (682)
T Consensus 8 ~~~~Ls~eee~~L~~~~~~Gd~~Ar~~Li~~nlrLV~siA~ry~~~g~~~~DLiQeG~iGLi~A~ekF 75 (251)
T PRK05572 8 KKEQLKDEENKELIKKAQDGDKEARDKLVEKNLRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKAVDKF 75 (251)
T ss_pred CCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 68999999999999999807999999999985999999998775899998899999999999996225