HHsearch alignment for GI: 254780289 and conserved domain: PRK05803
>PRK05803 sporulation sigma factor SigK; Reviewed.
Probab=97.85 E-value=0.00012 Score=55.66 Aligned_cols=67 Identities=22% Similarity=0.145 Sum_probs=46.3
Q ss_pred HHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHC--CHHHHHH-------HHHHHHHHCCCHHHHHHHHH
Q ss_conf 9999998569768897889999999998899999998728--2389999-------99998731171036787642
Q gi|254780289|r 121 VRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCES--PLTFQAL-------IIWRDELNDGTTLLREIIDL 187 (682)
Q Consensus 121 VRMYLREMG~V~LLTREgEIeIAKRIE~G~~~i~~al~~~--P~ti~~i-------l~~~e~i~~ge~~LrdIIDl 187 (682)
T Consensus 17 l~syl~~i~~~~~Ls~eEE~~La~~~~~GD~~Ar~~LI~~NLRLVvsIAkky~~~g~~l~DLIQEGniGLi~Avek 92 (228)
T PRK05803 17 LVSYVKNNSFPQPLSEEEERKYLELMKQGDEEARNILIERNLRLVAHIVKKFENTGEDVDDLISIGTIGLIKAIDS 92 (228)
T ss_pred HHHHHHCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9999974788999999999999999984689999999998779999999627799989899999999999999998