HHsearch alignment for GI: 254780289 and conserved domain: PRK06288
>PRK06288 RNA polymerase sigma factor WhiG; Reviewed.
Probab=100.00 E-value=0 Score=438.67 Aligned_cols=239 Identities=28% Similarity=0.401 Sum_probs=215.5
Q ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 1126889999998765-3321124689998755578999887522---35677788754436799998874385457312
Q gi|254780289|r 421 GISISEFRHIVSMVRK-GECEASIAKKEMVEANLRLVISVAKKYT---NRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKF 496 (682)
Q Consensus 421 gl~i~ElK~i~r~I~~-ge~e~~~AK~~l~~anlr~v~~~~~~~~---~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f 496 (682)
T Consensus 7 ~~s~eee~eL~~~~~~~gd---~~ar~~LI~~nlrLV~~iA~~~~~~~~~~~~~~DLiQeG~iGLi~AvekFDp~rG~rF 83 (261)
T PRK06288 7 KYAQQDETELWKSYKETGD---AKIREYLILKYSPLVKYVAGRVAVGMPQNVEFDDLVSYGVFGLLDAIEKFDPEREIKF 83 (261)
T ss_pred CCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 2386999999999988199---9999999998599999999998457999999999999999999999996599878883
Q ss_pred EHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH--HHCCCC
Q ss_conf 010289899999999972287046142058898999999999877608899978999870999899999998--608987
Q gi|254780289|r 497 STYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLK--ITKEPI 574 (682)
Q Consensus 497 ~tya~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~ 574 (682)
T Consensus 84 sTYA~~wIr~aI~~~lR~~~---~~pr~~~~~~~ki~~~~~~l~~~~gr~pt~~eia~~lg~~~~~v~~~~~~~~~~~~~ 160 (261)
T PRK06288 84 ETYAITRIRGAIFDELRSID---WIPRSVRQKARQVERAIAMLEAKLGRTPTDDEIAKELGISLEEYHSLLSKVSGTSVV 160 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCC
T ss_conf 98799999999999999860---031999999999999999999986899987888878199999999999997269974
Q ss_pred CCCCCCCC---CCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCC
Q ss_conf 55363588---998604756238988998999999999999999973299889999999818798674688999899667
Q gi|254780289|r 575 SLETPIGD---EDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCV 651 (682)
Q Consensus 575 sl~~~~~~---~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~ 651 (682)
T Consensus 161 SLd~~~~~~~~~~~~~~~d~l~d~~~~~p~~~~e~~~~~~~l~~~l~~L~erEr~Il~lry~----e~~Tl~eIa~~lgi 236 (261)
T PRK06288 161 SLNDLLFLGDENDEVSLMDTLEDPAAMNPDEIIEKEEIKRVIVEAINTLPEREKKVITLYYY----EDLTLKEIGEVLGV 236 (261)
T ss_pred CCCCCCCCCCCCCCCCHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC----CCCCHHHHHHHHCC
T ss_conf 76777657999864308787058898999999999999999999987089999999999807----99889999999797
Q ss_pred CHHHHHHHHHHHHHHHCC
Q ss_conf 899999999999998329
Q gi|254780289|r 652 TRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 652 ~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 237 S~eRVrQie~~AL~kLR~ 254 (261)
T PRK06288 237 TESRISQIHTKAVLQLRA 254 (261)
T ss_pred CHHHHHHHHHHHHHHHHH
T ss_conf 899999999999999999