HHsearch alignment for GI: 254780289 and conserved domain: PRK06930
>PRK06930 positive control sigma-like factor; Validated.
Probab=97.45 E-value=0.0006 Score=50.11 Aligned_cols=61 Identities=18% Similarity=0.242 Sum_probs=54.1
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 605 IQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 605 ~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 100 ~se~d~~~iedALs~Lt~rErevfll~~----~~glsy~EIA~~L~Is~~tV~~~l~RA~~Ki~~ 160 (170)
T PRK06930 100 ISEWDKIRIEDALSVLTEREKEVYLMHR----GYGLSYSEIAAYLNIKKSTVQSMIERAEKKIAK 160 (170)
T ss_pred CCHHHHHHHHHHHHHCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 0389998899999856988889998897----618889999999798899999999999999999