HHsearch alignment for GI: 254780289 and conserved domain: PRK06930

>PRK06930 positive control sigma-like factor; Validated.
Probab=97.45  E-value=0.0006  Score=50.11  Aligned_cols=61  Identities=18%  Similarity=0.242  Sum_probs=54.1

Q ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             99999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r  605 IQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH  669 (682)
Q Consensus       605 ~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~  669 (682)
T Consensus       100 ~se~d~~~iedALs~Lt~rErevfll~~----~~glsy~EIA~~L~Is~~tV~~~l~RA~~Ki~~  160 (170)
T PRK06930        100 ISEWDKIRIEDALSVLTEREKEVYLMHR----GYGLSYSEIAAYLNIKKSTVQSMIERAEKKIAK  160 (170)
T ss_pred             CCHHHHHHHHHHHHHCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             0389998899999856988889998897----618889999999798899999999999999999