HHsearch alignment for GI: 254780289 and conserved domain: PRK07405

>PRK07405 RNA polymerase sigma factor SigD; Validated.

Probab=93.96  E-value=0.47  Score=27.29  Aligned_cols=37  Identities=41%  Similarity=0.636  Sum_probs=33.6

Q ss_pred             CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             7777289999998569768897889999999998899
Q gi|254780289|r  115 RSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRA  151 (682)
Q Consensus       115 ~rtdDPVRMYLREMG~V~LLTREgEIeIAKRIE~G~~  151 (682)
T Consensus         5 ~~~~d~~~~Yl~ei~~~~LLt~eeE~~la~~i~~~~~   41 (318)
T PRK07405          5 KTATDLVRTYLREIGRVPLLTHEEEILYGKQVQRLMA   41 (318)
T ss_pred             CCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf             7898759999998177679999999999999999988