HHsearch alignment for GI: 254780289 and conserved domain: PRK07408

>PRK07408 RNA polymerase sigma factor SigF; Reviewed.
Probab=100.00  E-value=0  Score=455.36  Aligned_cols=234  Identities=25%  Similarity=0.401  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
Q ss_conf             999998765332112468999875557899988752235-6777887544367999988743854573120102898999
Q gi|254780289|r  428 RHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNR-GLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQ  506 (682)
Q Consensus       428 K~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~  506 (682)
T Consensus        12 ~eL~~~y~~--~gd~~ar~~LI~~nlrLV~~iA~ry~~~~~~~~~DLiQeG~iGLi~AvekFDp~kG~rFsTYA~~wIr~   89 (256)
T PRK07408         12 MELLRAYQQ--TPSIALRNQLVELNLGLVRKEAHRWSNQCSEPYEDLEQVGYLGLIRAIERFDPSKGHAFSSFAVPYIRG   89 (256)
T ss_pred             HHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf             999999988--499999999999809999999998615799987899999999999999973973389889999999999


Q ss_pred             HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH--HHCCCCCCCCCCCCCC
Q ss_conf             99999972287046142058898999999999877608899978999870999899999998--6089875536358899
Q gi|254780289|r  507 AITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLK--ITKEPISLETPIGDED  584 (682)
Q Consensus       507 ~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~sl~~~~~~~~  584 (682)
T Consensus        90 ~I~~~lr~~~~~iRiP~~~~~~~~ki~~~~~~l~~~~gr~pt~~EiA~~l~is~~~v~~~~~~~~~~~~~SLd~~~~~~~  169 (256)
T PRK07408         90 EIQHYLRDKSPTVRIPRRWLELQRQAKKVRQELRQELGRQPTDQEIAQALDISLEEWQEIKLALQNRMPLSLDAPVSQDE  169 (256)
T ss_pred             HHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf             99999998089741369999999999999999999878999899999895969999999999872788730566477999


Q ss_pred             C--CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf             8--60475623898899899999999999999997329988999999981879867468899989966789999999999
Q gi|254780289|r  585 T--SHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAK  662 (682)
Q Consensus       585 ~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~  662 (682)
T Consensus       170 d~~~~l~d~l~d~~~~~~~~~~e---~~~~L~~~l~~L~eREr~Il~~ry~~~----~tl~EIa~~lgvS~~rVsqi~~~  242 (256)
T PRK07408        170 DGSTSLGDLLPDPRYRSFQLAQE---DRIRLQQALAQLEERTREVLEFVFLHD----LTQKEAAERLGISPVTVSRRVKK  242 (256)
T ss_pred             CCCCHHHHHCCCCCCCHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHCCC----CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             87611777558999753889999---999999998569999999999996379----98999998979899999999999


Q ss_pred             HHHHHCCH
Q ss_conf             99983296
Q gi|254780289|r  663 AIRKLKHP  670 (682)
Q Consensus       663 a~~~l~~~  670 (682)
T Consensus       243 AL~kLR~~  250 (256)
T PRK07408        243 GLQQLKKL  250 (256)
T ss_pred             HHHHHHHH
T ss_conf             99999997