HHsearch alignment for GI: 254780289 and conserved domain: PRK07408
>PRK07408 RNA polymerase sigma factor SigF; Reviewed.
Probab=100.00 E-value=0 Score=455.36 Aligned_cols=234 Identities=25% Similarity=0.401 Sum_probs=205.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHH
Q ss_conf 999998765332112468999875557899988752235-6777887544367999988743854573120102898999
Q gi|254780289|r 428 RHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNR-GLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQ 506 (682)
Q Consensus 428 K~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~-~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~ 506 (682)
T Consensus 12 ~eL~~~y~~--~gd~~ar~~LI~~nlrLV~~iA~ry~~~~~~~~~DLiQeG~iGLi~AvekFDp~kG~rFsTYA~~wIr~ 89 (256)
T PRK07408 12 MELLRAYQQ--TPSIALRNQLVELNLGLVRKEAHRWSNQCSEPYEDLEQVGYLGLIRAIERFDPSKGHAFSSFAVPYIRG 89 (256)
T ss_pred HHHHHHHHH--CCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
T ss_conf 999999988--499999999999809999999998615799987899999999999999973973389889999999999
Q ss_pred HHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH--HHCCCCCCCCCCCCCC
Q ss_conf 99999972287046142058898999999999877608899978999870999899999998--6089875536358899
Q gi|254780289|r 507 AITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLK--ITKEPISLETPIGDED 584 (682)
Q Consensus 507 ~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~sl~~~~~~~~ 584 (682)
T Consensus 90 ~I~~~lr~~~~~iRiP~~~~~~~~ki~~~~~~l~~~~gr~pt~~EiA~~l~is~~~v~~~~~~~~~~~~~SLd~~~~~~~ 169 (256)
T PRK07408 90 EIQHYLRDKSPTVRIPRRWLELQRQAKKVRQELRQELGRQPTDQEIAQALDISLEEWQEIKLALQNRMPLSLDAPVSQDE 169 (256)
T ss_pred HHHHHHHHHCCCEECCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCCCEECCCCCCCCC
T ss_conf 99999998089741369999999999999999999878999899999895969999999999872788730566477999
Q ss_pred C--CEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 8--60475623898899899999999999999997329988999999981879867468899989966789999999999
Q gi|254780289|r 585 T--SHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAK 662 (682)
Q Consensus 585 ~--~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~ 662 (682)
T Consensus 170 d~~~~l~d~l~d~~~~~~~~~~e---~~~~L~~~l~~L~eREr~Il~~ry~~~----~tl~EIa~~lgvS~~rVsqi~~~ 242 (256)
T PRK07408 170 DGSTSLGDLLPDPRYRSFQLAQE---DRIRLQQALAQLEERTREVLEFVFLHD----LTQKEAAERLGISPVTVSRRVKK 242 (256)
T ss_pred CCCCHHHHHCCCCCCCHHHHHHH---HHHHHHHHHHCCCHHHHHHHHHHHCCC----CCHHHHHHHHCCCHHHHHHHHHH
T ss_conf 87611777558999753889999---999999998569999999999996379----98999998979899999999999
Q ss_pred HHHHHCCH
Q ss_conf 99983296
Q gi|254780289|r 663 AIRKLKHP 670 (682)
Q Consensus 663 a~~~l~~~ 670 (682)
T Consensus 243 AL~kLR~~ 250 (256)
T PRK07408 243 GLQQLKKL 250 (256)
T ss_pred HHHHHHHH
T ss_conf 99999997