HHsearch alignment for GI: 254780289 and conserved domain: PRK07670
>PRK07670 RNA polymerase sigma factor SigD; Validated.
Probab=100.00 E-value=0 Score=427.92 Aligned_cols=222 Identities=27% Similarity=0.433 Sum_probs=207.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1246899987555789998875223---5677788754436799998874385457312010289899999999972287
Q gi|254780289|r 441 ASIAKKEMVEANLRLVISVAKKYTN---RGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSC 517 (682)
Q Consensus 441 ~~~AK~~l~~anlr~v~~~~~~~~~---~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~ 517 (682)
T Consensus 16 D~~Ar~~LV~~nl~LV~~ia~r~~~~~~~~v~~eDLiQeG~iGLi~AiekFDp~~G~rFsTYA~~wIr~aI~~~lr~~~- 94 (250)
T PRK07670 16 DPEAADDLIRRYMPLVTYHVQRISAGLPKSVSKDDLKSLGMLGLYDALEKFDPSRDLKFDTYASFRIRGAIIDGLRKED- 94 (250)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCC-
T ss_conf 9999999999819999999999970489999888999999999999999609866999077219999999999987425-
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHH--HHCCCCCCCCCCCCC-CCCEEEEEECC
Q ss_conf 046142058898999999999877608899978999870999899999998--608987553635889-98604756238
Q gi|254780289|r 518 TIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLK--ITKEPISLETPIGDE-DTSHLGDFIED 594 (682)
Q Consensus 518 ~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~sl~~~~~~~-~~~~~~~~~~d 594 (682)
T Consensus 95 --~lpr~~~~~~~ki~~~~~~l~~~~gr~ps~~eia~~lg~s~~~v~~~~~~~~~~~~~Sld~~~~~~~~~~~~~~~~~d 172 (250)
T PRK07670 95 --WLPRSSREKTKKVEAAIEKLEQRYMRNVTPSEVAAELGMSEEEVVTTMNEGFFANLLSIDEKLHDQDDGENVQVMIRD 172 (250)
T ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHC
T ss_conf --400999999999999999999983899988899877199999999999987547980367777788885047788852
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 988998999999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 595 KNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 595 ~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 173 ~~~~~pe~~~~~~~~~~~L~~~l~~L~~rEr~Vl~l~y----~e~~Tl~eIa~~lgvS~erVrQi~~~AL~kLr~ 243 (250)
T PRK07670 173 DKAVTPEEKLVKEELIEQLAEKIKELNEKEQLVISLFY----KEELTLTEIGQVLNLSTSRISQIHSKALFKLKK 243 (250)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHC----CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 46799999999999999999998558999999999974----898689999999897999999999999999999