HHsearch alignment for GI: 254780289 and conserved domain: PRK07921
>PRK07921 RNA polymerase sigma factor SigB; Reviewed.
Probab=100.00 E-value=0 Score=668.40 Aligned_cols=240 Identities=47% Similarity=0.854 Sum_probs=236.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 12468999875557899988752235677788754436799998874385457312010289899999999972287046
Q gi|254780289|r 441 ASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIR 520 (682)
Q Consensus 441 ~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r 520 (682)
T Consensus 80 g~~A~~~lI~aNLRLVvsIAk~Y~~~Gl~~~DLIQEGniGLirAvekFDp~rG~rFSTYA~wWIRq~I~r~i~~~~r~IR 159 (320)
T PRK07921 80 GEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGNLGLIRAMEKFDYTKGFKFSTYATWWIRQAITRGMADQSRTIR 159 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 69999999998189999999856589999899999838999988851689999812877799999999999997086214
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCH
Q ss_conf 14205889899999999987760889997899987099989999999860898755363588998604756238988998
Q gi|254780289|r 521 IPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSP 600 (682)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~ 600 (682)
T Consensus 160 lP~~~~~~~~ki~~~~~~l~~~lGR~Pt~eEIA~~lgi~~~~v~~~l~~~~~~~SLD~~vg~d~~~~l~d~i~D~~~~~~ 239 (320)
T PRK07921 160 LPVHLVEQVNKLARIKREMHQHLGREATDEELAEESGIPEEKINDLLEHSRDPVSLDMPVGSDEEAPLGDFIEDAEAMSA 239 (320)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCH
T ss_conf 71889999999999999999983899989999988199999999999972888366776688875303324405678998
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Q ss_conf 99999999999999997329988999999981879867468899989966789999999999999832967778756651
Q gi|254780289|r 601 LDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFL 680 (682)
Q Consensus 601 ~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~~~~ 680 (682)
T Consensus 240 e~~~~~~~l~~~L~~~L~~L~eREr~IL~~RfGl~~~~~~TL~EIg~~lgvSrERVRQIE~~AL~KLR~~~~~~~L~~y~ 319 (320)
T PRK07921 240 ENAVIAELLHTDIRSVLATLDEREQQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIEREVMSKLRHGERADRLRSYA 319 (320)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 99999999999999999759999999999974899989747999998979699999999999999970728888887542