HHsearch alignment for GI: 254780289 and conserved domain: PRK08215
>PRK08215 sporulation sigma factor SigG; Reviewed.
Probab=100.00 E-value=0 Score=459.20 Aligned_cols=240 Identities=30% Similarity=0.456 Sum_probs=213.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 22221126889999998765332112468999875557899988752235677788754436799998874385457312
Q gi|254780289|r 417 SVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKF 496 (682)
Q Consensus 417 e~~~gl~i~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f 496 (682)
T Consensus 14 ~k~PlLt~EEe~~L~~~~~~gD---~~Ar~~LI~~nLrLV~~iA~ky~~~g~~~~DLiQeG~iGLi~AiekFDp~rG~rF 90 (257)
T PRK08215 14 SKLPVLKNEEMKELFRRMQNGD---TSAREKLINGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKAIDNFDLSQNVKF 90 (257)
T ss_pred CCCCCCCHHHHHHHHHHHHHCC---HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCE
T ss_conf 2489999999999999999388---9999999998789999999876589989889999879999999997097679954
Q ss_pred EHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCC
Q ss_conf 01028989999999997228704614205889899999999987760889997899987099989999999860898755
Q gi|254780289|r 497 STYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISL 576 (682)
Q Consensus 497 ~tya~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl 576 (682)
T Consensus 91 sTYA~~wIr~~I~~~i~~~-~~irip~~~~~~~~k~~~~~~~l~~~~~r~pt~~eiA~~l~i~~~~v~~~l~~~~~~~SL 169 (257)
T PRK08215 91 STYAVPMIIGEIRRYLRDN-NPIRVSRSLRDIAYKALQVREKLIKENSKEPTVSEIAKELEVPREEVVFALDAIQDPVSL 169 (257)
T ss_pred EEHHHHHHHHHHHHHHHHC-CCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHCCCCCCC
T ss_conf 3211999999999999967-985100999999999999999999983899999999988098999999999863898667
Q ss_pred CCCCCCCCCC--EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHH
Q ss_conf 3635889986--04756238988998999999999999999973299889999999818798674688999899667899
Q gi|254780289|r 577 ETPIGDEDTS--HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRE 654 (682)
Q Consensus 577 ~~~~~~~~~~--~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~e 654 (682)
T Consensus 170 ~~~~~~d~~d~~~~~d~~~d~~~~~-~~~~~----~~~l~~~l~~L~~REr~Ii~~ry~----~~~Tl~eIa~~lGvSre 240 (257)
T PRK08215 170 FEPIYHDGGDPIFVMDQISDEKNKD-EQWLE----EIALKEAMKRLNDREKMILNLRFF----QGKTQMEVADEIGISQA 240 (257)
T ss_pred CCCCCCCCCCCHHHHHCCCCCCCCC-HHHHH----HHHHHHHHHCCCHHHHHHHHHHHC----CCCCHHHHHHHHCCCHH
T ss_conf 6855578997104422147976550-89999----999999996499999999999947----99989999999896999
Q ss_pred HHHHHHHHHHHHHCC
Q ss_conf 999999999998329
Q gi|254780289|r 655 RIRQIEAKAIRKLKH 669 (682)
Q Consensus 655 r~rqi~~~a~~~l~~ 669 (682)
T Consensus 241 RVrQie~~AL~kLR~ 255 (257)
T PRK08215 241 QVSRLEKAALKHMRK 255 (257)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999985