HHsearch alignment for GI: 254780289 and conserved domain: PRK08295
>PRK08295 RNA polymerase factor sigma-70; Validated.
Probab=99.84 E-value=6.7e-19 Score=168.17 Aligned_cols=194 Identities=24% Similarity=0.320 Sum_probs=161.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHH
Q ss_conf 12688999999876533211246899987555789998875223567778875443679999887438545731201028
Q gi|254780289|r 422 ISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAM 501 (682)
Q Consensus 422 l~i~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~ 501 (682)
T Consensus 6 ~~~~~d~~Li~~~~~GD~---~Af~~L~~~y~~~v~~~~~~~~~~~~d~EDlvQe~~i~l~kai~~f~~~k~~~F~t~~~ 82 (209)
T PRK08295 6 LRDKEDEELVELAQSGDT---EALEYLIEKYKNFVRAKARSYFLIGAEREDIVQEGMIGLYKAIRDYDEDKLSSFKSFAE 82 (209)
T ss_pred CCHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHH
T ss_conf 872019999999991679---99999999989999999999828987799999999999999998568654872899999
Q ss_pred HHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98999999999722870461420588989999999998776088999789998709998999999986089875536358
Q gi|254780289|r 502 WWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIG 581 (682)
Q Consensus 502 ~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~ 581 (682)
T Consensus 83 ~~i~~~i~~~ir~~~r~k~~~~-----------------------------------------------~~~~sld~~~~ 115 (209)
T PRK08295 83 LCITRQIITAIKTANRQKHIPL-----------------------------------------------NSYVSLDKPIY 115 (209)
T ss_pred HHHHHHHHHHHHHHHCCCCCCC-----------------------------------------------CHHHCCCCCCC
T ss_conf 9999999999999833045452-----------------------------------------------02414566645
Q ss_pred CCC-CCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHH-HCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 899-860475623898899899999999999999997-329988999999981879867468899989966789999999
Q gi|254780289|r 582 DED-TSHLGDFIEDKNAVSPLDSAIQANLRETTTRVL-ASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQI 659 (682)
Q Consensus 582 ~~~-~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l-~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi 659 (682)
T Consensus 116 ~~~~~~~~~~~~~~~~~~~pe~~~~~~e~~~~i~~~i~~~l~~~e~~V~~~~~-----eg~s~~EIA~~l~is~~tV~~~ 190 (209)
T PRK08295 116 DEESDRTLLDVISGAKVTDPEELIISKEELEIIEEKILELLSDLEKEVLELYL-----DGKSYQEIAEELNRHVKSIDNA 190 (209)
T ss_pred CCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----CCCCHHHHHHHHCCCHHHHHHH
T ss_conf 55420356543046778999999999999999999998469189999999998-----6999999999989299999999
Q ss_pred HHHHHHHHCCH
Q ss_conf 99999983296
Q gi|254780289|r 660 EAKAIRKLKHP 670 (682)
Q Consensus 660 ~~~a~~~l~~~ 670 (682)
T Consensus 191 l~RarkkLr~~ 201 (209)
T PRK08295 191 LQRVKRKLEKY 201 (209)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999999