HHsearch alignment for GI: 254780289 and conserved domain: PRK08311

>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed.
Probab=98.56  E-value=3.9e-07  Score=75.33  Aligned_cols=93  Identities=17%  Similarity=0.285  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
Q ss_conf             9999998765332112468999875557899988752235677--78875443679999887438545731201028989
Q gi|254780289|r  427 FRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQ--FLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWV  504 (682)
Q Consensus       427 lK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i  504 (682)
T Consensus         5 le~~l~~i~~Gd---~~~re~lI~~y~pfI~k~~s~~~~r~~~~e~DDe~SIgliAfneAI~~y~~~kg~~F~~fA~~vI   81 (237)
T PRK08311          5 IEDILEKIQNGD---EELREELIEEYKPFILKVVSSVCGRYIDWENDDELSIGLIAFNEAIDSYDEEKGKSFLSFAELVI   81 (237)
T ss_pred             HHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf             999999988678---99999999992789999999996777898878299899999999998628335986599999999


Q ss_pred             HHHHHHHHHHCCCEEECC
Q ss_conf             999999997228704614
Q gi|254780289|r  505 KQAITRSIADQSCTIRIP  522 (682)
Q Consensus       505 ~~~i~~~~~~~~~~~r~~  522 (682)
T Consensus        82 k~rliDy~Rke~k~~~~~   99 (237)
T PRK08311         82 KRRLIDYIRKEKKHSKVV   99 (237)
T ss_pred             HHHHHHHHHHHCCCCCCC
T ss_conf             999999999740444568