HHsearch alignment for GI: 254780289 and conserved domain: PRK08311
>PRK08311 putative RNA polymerase sigma factor SigI; Reviewed.
Probab=98.56 E-value=3.9e-07 Score=75.33 Aligned_cols=93 Identities=17% Similarity=0.285 Sum_probs=80.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHH
Q ss_conf 9999998765332112468999875557899988752235677--78875443679999887438545731201028989
Q gi|254780289|r 427 FRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQ--FLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWV 504 (682)
Q Consensus 427 lK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~--~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i 504 (682)
T Consensus 5 le~~l~~i~~Gd---~~~re~lI~~y~pfI~k~~s~~~~r~~~~e~DDe~SIgliAfneAI~~y~~~kg~~F~~fA~~vI 81 (237)
T PRK08311 5 IEDILEKIQNGD---EELREELIEEYKPFILKVVSSVCGRYIDWENDDELSIGLIAFNEAIDSYDEEKGKSFLSFAELVI 81 (237)
T ss_pred HHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHH
T ss_conf 999999988678---99999999992789999999996777898878299899999999998628335986599999999
Q ss_pred HHHHHHHHHHCCCEEECC
Q ss_conf 999999997228704614
Q gi|254780289|r 505 KQAITRSIADQSCTIRIP 522 (682)
Q Consensus 505 ~~~i~~~~~~~~~~~r~~ 522 (682)
T Consensus 82 k~rliDy~Rke~k~~~~~ 99 (237)
T PRK08311 82 KRRLIDYIRKEKKHSKVV 99 (237)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999999740444568