HHsearch alignment for GI: 254780289 and conserved domain: PRK08583
>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=100.00 E-value=0 Score=466.21 Aligned_cols=248 Identities=21% Similarity=0.398 Sum_probs=221.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 33222221126889999998765-33211246899987555789998875223567778875443679999887438545
Q gi|254780289|r 414 KSISVETGISISEFRHIVSMVRK-GECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCL 492 (682)
Q Consensus 414 ~~ie~~~gl~i~ElK~i~r~I~~-ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~ 492 (682)
T Consensus 2 ~~~~~~~~Lt~eee~~L~~~~~~~gd---~~Ar~~Li~~nlrLV~~iA~~y~~~g~~~~DLiQeG~iGLi~AiekFDp~r 78 (257)
T PRK08583 2 KESSQPTKLTKEDVNQWIAEYQENQD---EEAQEKLVKHYKNLVESLAYKYSKGQSHHEDLVQVGMVGLLGAIRRYDYSF 78 (257)
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 86768999999999999999988199---999999999849999999998626898861799999999999987069865
Q ss_pred CCEEEHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHC-
Q ss_conf 7312010289899999999972287046142058898999999999877608899978999870999899999998608-
Q gi|254780289|r 493 GYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITK- 571 (682)
Q Consensus 493 g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 571 (682)
T Consensus 79 G~rFsTYA~~wIr~~I~~~lr~~~~~ir~P~~~~~~~~ki~~~~~~l~~~~~r~pt~~eiA~~l~~s~e~v~~~l~~~~~ 158 (257)
T PRK08583 79 GRSFEAFAVPTIIGEIKRYLRDKTWSVHVPRRIKELGPKIKKAVDELTDELQRSPKISEIADRLGVSEEEVLEAMEMGKS 158 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCC
T ss_conf 88839878999999999999964871135499999988899999999998089987999998959599999999997516
Q ss_pred -CCCCCCCCCCCCCCC---EEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHH
Q ss_conf -987553635889986---0475623898899899999999999999997329988999999981879867468899989
Q gi|254780289|r 572 -EPISLETPIGDEDTS---HLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGK 647 (682)
Q Consensus 572 -~~~sl~~~~~~~~~~---~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~ 647 (682)
T Consensus 159 ~~~~Sld~~~~~d~d~~~~~~~d~~~~-----~e~~~e~~e~~~~l~~~l~~L~erEr~Ii~lry~----~~~t~~eIa~ 229 (257)
T PRK08583 159 YQALSVDHSIEADSDGSTVTLLDIVGQ-----QEDGYELTEQRMILEKILPVLSDREKSIIQCTFI----ENLSQKETGE 229 (257)
T ss_pred CCCCCCCCCCCCCCCCCCCCHHHCCCC-----CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHC----CCCCHHHHHH
T ss_conf 897027888877888771204330489-----6624789999999999995499999999999957----9999999999
Q ss_pred HHCCCHHHHHHHHHHHHHHHCCHHHH
Q ss_conf 96678999999999999983296777
Q gi|254780289|r 648 QFCVTRERIRQIEAKAIRKLKHPSRS 673 (682)
Q Consensus 648 ~~~~~~er~rqi~~~a~~~l~~~~~~ 673 (682)
T Consensus 230 ~lGiS~eRVrQi~~~Al~kLR~~~~~ 255 (257)
T PRK08583 230 RLGISQMHVSRLQRQAIKKLREAAFL 255 (257)
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 98969999999999999998777505