HHsearch alignment for GI: 254780289 and conserved domain: PRK08583
>PRK08583 RNA polymerase sigma factor SigB; Validated.
Probab=95.84 E-value=0.0099 Score=40.52 Aligned_cols=62 Identities=15% Similarity=0.081 Sum_probs=40.3
Q ss_pred HHHHCCCCCCCHHHHHHHHHHHHH-HHHHHHHHHHHC--CHHHHHHHHH-------HHHHHCCCHHHHHHHH
Q ss_conf 998569768897889999999998-899999998728--2389999999-------9873117103678764
Q gi|254780289|r 125 LREMGSIELLSREGEIAIAKRIEA-GRAMMMASLCES--PLTFQALIIW-------RDELNDGTTLLREIID 186 (682)
Q Consensus 125 LREMG~V~LLTREgEIeIAKRIE~-G~~~i~~al~~~--P~ti~~il~~-------~e~i~~ge~~LrdIID 186 (682)
T Consensus 1 ~~~~~~~~~Lt~eee~~L~~~~~~~gd~~Ar~~Li~~nlrLV~~iA~~y~~~g~~~~DLiQeG~iGLi~Aie 72 (257)
T PRK08583 1 MKESSQPTKLTKEDVNQWIAEYQENQDEEAQEKLVKHYKNLVESLAYKYSKGQSHHEDLVQVGMVGLLGAIR 72 (257)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 986768999999999999999988199999999999849999999998626898861799999999999987