HHsearch alignment for GI: 254780289 and conserved domain: PRK09047
>PRK09047 RNA polymerase factor sigma-70; Validated.
Probab=98.46 E-value=9.9e-06 Score=64.19 Aligned_cols=74 Identities=18% Similarity=0.287 Sum_probs=67.1
Q ss_pred ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 238988998999999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 592 IEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 592 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 79 ~~~~~~~~p~~~~~~~e~~~~l~~ai~~Lp~~qR~vl~L~~----~egls~~EIA~~l~is~~tVk~~l~RAr~~Lr~ 152 (161)
T PRK09047 79 ADDDGAESPEDRLERAQVLQLIEEAIQKLPARQREAFLLRY----WEDMDVAETAAAMGCSEGSVKTHCSRATHTLAK 152 (161)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 56766899999999999999999999819999999989999----987799999999896999999999999999999