HHsearch alignment for GI: 254780289 and conserved domain: PRK09047

>PRK09047 RNA polymerase factor sigma-70; Validated.
Probab=98.46  E-value=9.9e-06  Score=64.19  Aligned_cols=74  Identities=18%  Similarity=0.287  Sum_probs=67.1

Q ss_pred             ECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             238988998999999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r  592 IEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH  669 (682)
Q Consensus       592 ~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~  669 (682)
T Consensus        79 ~~~~~~~~p~~~~~~~e~~~~l~~ai~~Lp~~qR~vl~L~~----~egls~~EIA~~l~is~~tVk~~l~RAr~~Lr~  152 (161)
T PRK09047         79 ADDDGAESPEDRLERAQVLQLIEEAIQKLPARQREAFLLRY----WEDMDVAETAAAMGCSEGSVKTHCSRATHTLAK  152 (161)
T ss_pred             CCCCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             56766899999999999999999999819999999989999----987799999999896999999999999999999