HHsearch alignment for GI: 254780289 and conserved domain: PRK09639
>PRK09639 RNA polymerase sigma factor SigX; Provisional.
Probab=98.52 E-value=1.4e-05 Score=62.93 Aligned_cols=157 Identities=18% Similarity=0.218 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 12468999875557899988752235677788754436799998874385457312010289899999999972287046
Q gi|254780289|r 441 ASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIR 520 (682)
Q Consensus 441 ~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r 520 (682)
T Consensus 1 meeAF~~ly~~y~~~l~~~~~~~~~d~~~AeDl~Qe~flk~~~~--~~~~~~--~~~---~wL~~ia~n~~~-d~----- 67 (166)
T PRK09639 1 MEETFEDLFKQYYQDVVQQIIYIVKDRTQAEDLAQEVFLRLLRS--DWKGIE--NEK---GWLIKSARNVAY-NY----- 67 (166)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCCCCC--CHH---HHHHHHHHHHHH-HH-----
T ss_conf 98999999999999999999999299999999999999999872--635446--789---999999999999-99-----
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCH
Q ss_conf 14205889899999999987760889997899987099989999999860898755363588998604756238988998
Q gi|254780289|r 521 IPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSP 600 (682)
Q Consensus 521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~ 600 (682)
T Consensus 68 -----------~R~~~~~~~---------------------------------~~~~-~~~---------~~~~~~~~~~ 93 (166)
T PRK09639 68 -----------FRSEKRHRA---------------------------------RILG-EFQ---------WQEEQIDSSP 93 (166)
T ss_pred -----------HHHHHHHHH---------------------------------HHCC-CHH---------CCCCCCCCCH
T ss_conf -----------998840201---------------------------------0000-100---------0134557997
Q ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 601 LDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 601 ~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 94 e~~~~~~~~~~~l~~~l~~Lp~~~r~v~~l~~--~-g--~s~~EIA~~l~is~~tVk~~l~RA~~~Lr~ 157 (166)
T PRK09639 94 EEIWIRKEEITKVQEVLAKMTERDRTVLLLRF--S-G--YSYKEIAQALGIDESSVGTTLHRAKKKFRK 157 (166)
T ss_pred HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--H-C--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 89999899999999998839999999999999--3-8--999999999891999999999999999999