HHsearch alignment for GI: 254780289 and conserved domain: PRK09639

>PRK09639 RNA polymerase sigma factor SigX; Provisional.
Probab=98.52  E-value=1.4e-05  Score=62.93  Aligned_cols=157  Identities=18%  Similarity=0.218  Sum_probs=108.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEE
Q ss_conf             12468999875557899988752235677788754436799998874385457312010289899999999972287046
Q gi|254780289|r  441 ASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIR  520 (682)
Q Consensus       441 ~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r  520 (682)
T Consensus         1 meeAF~~ly~~y~~~l~~~~~~~~~d~~~AeDl~Qe~flk~~~~--~~~~~~--~~~---~wL~~ia~n~~~-d~-----   67 (166)
T PRK09639          1 MEETFEDLFKQYYQDVVQQIIYIVKDRTQAEDLAQEVFLRLLRS--DWKGIE--NEK---GWLIKSARNVAY-NY-----   67 (166)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC--CCCCCC--CHH---HHHHHHHHHHHH-HH-----
T ss_conf             98999999999999999999999299999999999999999872--635446--789---999999999999-99-----


Q ss_pred             CCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCH
Q ss_conf             14205889899999999987760889997899987099989999999860898755363588998604756238988998
Q gi|254780289|r  521 IPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSP  600 (682)
Q Consensus       521 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~  600 (682)
T Consensus        68 -----------~R~~~~~~~---------------------------------~~~~-~~~---------~~~~~~~~~~   93 (166)
T PRK09639         68 -----------FRSEKRHRA---------------------------------RILG-EFQ---------WQEEQIDSSP   93 (166)
T ss_pred             -----------HHHHHHHHH---------------------------------HHCC-CHH---------CCCCCCCCCH
T ss_conf             -----------998840201---------------------------------0000-100---------0134557997


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf             999999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r  601 LDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH  669 (682)
Q Consensus       601 ~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~  669 (682)
T Consensus        94 e~~~~~~~~~~~l~~~l~~Lp~~~r~v~~l~~--~-g--~s~~EIA~~l~is~~tVk~~l~RA~~~Lr~  157 (166)
T PRK09639         94 EEIWIRKEEITKVQEVLAKMTERDRTVLLLRF--S-G--YSYKEIAQALGIDESSVGTTLHRAKKKFRK  157 (166)
T ss_pred             HHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH--H-C--CCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf             89999899999999998839999999999999--3-8--999999999891999999999999999999