HHsearch alignment for GI: 254780289 and conserved domain: PRK09646
>PRK09646 RNA polymerase sigma factor SigK; Reviewed.
Probab=99.03 E-value=3.8e-08 Score=83.29 Aligned_cols=177 Identities=16% Similarity=0.237 Sum_probs=125.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHH
Q ss_conf 12688999999876533211246899987555789998875223567778875443679999887438545731201028
Q gi|254780289|r 422 ISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAM 501 (682)
Q Consensus 422 l~i~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~ 501 (682)
T Consensus 12 ~~~~d~~~Li~~~~~GD~~---Af~~Ly~~y~~~l~~~~~~~~~d~~~AeDivQevFl~~~~~~~~~~~~~~-~~~---~ 84 (194)
T PRK09646 12 APSPDLDALLRRVARGDQD---AFAELYDRTASRVYGLVRRVLRDPGYSEETTQEVYLEVWRTASRFDPARG-SAL---A 84 (194)
T ss_pred CCCCCHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-CHH---H
T ss_conf 3796699999999936799---99999999999999999999299999999999999999997521475426-599---9
Q ss_pred HHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf 98999999999722870461420588989999999998776088999789998709998999999986089875536358
Q gi|254780289|r 502 WWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIG 581 (682)
Q Consensus 502 ~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~ 581 (682)
T Consensus 85 WL~~Ia~n~~~-----------------d~~R~~~~~~----~~-------------------------------~~~~~ 112 (194)
T PRK09646 85 WLLTLAHRRAV-----------------DRVRSEQAAS----QR-------------------------------EVRYG 112 (194)
T ss_pred HHHHHHHHHHH-----------------HHHHHHHHHH----HH-------------------------------HHHHC
T ss_conf 99999999999-----------------9999987413----24-------------------------------43200
Q ss_pred CCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHH
Q ss_conf 89986047562389889989999999999999999732998899999998187986746889998996678999999999
Q gi|254780289|r 582 DEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEA 661 (682)
Q Consensus 582 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~ 661 (682)
T Consensus 113 ~~~~~--------~~~~~~~e~~~~~~~~~~l~~~l~~Lp~~~R~vi~L~~----~~g~s~~EIA~~Lgis~~TVk~rl~ 180 (194)
T PRK09646 113 ARNVD--------PAFDQVAEEVEARLERERVRGCLDALTDTQREAITLAY----YGGLTYREVAERLAVPLGTVKTRMR 180 (194)
T ss_pred CCCCC--------CCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHH
T ss_conf 02368--------87553147899899999999999867815789999999----9399999999998919999999999
Q ss_pred HHHHHHCC
Q ss_conf 99998329
Q gi|254780289|r 662 KAIRKLKH 669 (682)
Q Consensus 662 ~a~~~l~~ 669 (682)
T Consensus 181 rA~~~LR~ 188 (194)
T PRK09646 181 DGLRRLRD 188 (194)
T ss_pred HHHHHHHH
T ss_conf 99999999