HHsearch alignment for GI: 254780289 and conserved domain: PRK09652
>PRK09652 RNA polymerase sigma factor RpoE; Provisional.
Probab=99.21 E-value=3.5e-09 Score=91.50 Aligned_cols=184 Identities=20% Similarity=0.235 Sum_probs=130.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHH
Q ss_conf 99999876533211246899987555789998875223567778875443679999887438545731201028989999
Q gi|254780289|r 428 RHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQA 507 (682)
Q Consensus 428 K~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~ 507 (682)
T Consensus 7 ~~Li~~~~~Gd~~---A~~~L~~~y~~~l~~~~~~~~~~~~~aeDv~Qe~fl~l~~~~~~~~~~~--~~~~wL~~iarn~ 81 (192)
T PRK09652 7 QELVERVQQGDRA---AFELLVRKYQPRLYRLLSRLVRDPADAEDLAQETFIKAYRALPSFRGGA--AFYTWLYRIAVNT 81 (192)
T ss_pred HHHHHHHHHCCHH---HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCH--HHHHHHHHHHHHH
T ss_conf 9999999838899---9999999999999999999969999999987599999887113457711--7999999999999
Q ss_pred HHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCE
Q ss_conf 99999722870461420588989999999998776088999789998709998999999986089875536358899860
Q gi|254780289|r 508 ITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSH 587 (682)
Q Consensus 508 i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~ 587 (682)
T Consensus 82 ~--------------------~d~~r~~~r--------~~~~~------------------------~~~~~--~~~~~~ 107 (192)
T PRK09652 82 A--------------------INYLRKQGR--------RPPES------------------------DLDAE--DAEYFE 107 (192)
T ss_pred H--------------------HHHHHHHHC--------CCCCC------------------------CCCHH--HHHHHC
T ss_conf 9--------------------999999716--------56655------------------------40023--454300
Q ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf 47562389889989999999999999999732998899999998187986746889998996678999999999999983
Q gi|254780289|r 588 LGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL 667 (682)
Q Consensus 588 ~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l 667 (682)
T Consensus 108 ~~~~--~~~~~~~e~~~~~~e~~~~l~~~l~~L~~~~r~v~~l~~----~~~~s~~EIA~~lgis~~tVk~~l~Ra~~~L 181 (192)
T PRK09652 108 DADA--LREISSPEEELLSQELEQRVRRAIESLPEELRTAITLRE----IEGLSYEEIAEIMGCPIGTVRSRIFRAREAL 181 (192)
T ss_pred CCCC--CCCCCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
T ss_conf 0003--555576799999999999999999839999998888999----7299999999998939999999999999999
Q ss_pred CCHHHHHHHHHHHC
Q ss_conf 29677787566517
Q gi|254780289|r 668 KHPSRSKKLRSFLD 681 (682)
Q Consensus 668 ~~~~~~~~l~~~~~ 681 (682)
T Consensus 182 r-----~~L~~~~~ 190 (192)
T PRK09652 182 R-----AKLQPLLD 190 (192)
T ss_pred H-----HHHHHHHH
T ss_conf 9-----99898771