HHsearch alignment for GI: 254780289 and conserved domain: PRK12511
>PRK12511 RNA polymerase sigma factor; Provisional.
Probab=98.01 E-value=0.00036 Score=51.89 Aligned_cols=150 Identities=12% Similarity=0.124 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEECCCHH
Q ss_conf 99987555789998875223567778875443679999887438545731201028989999999997228704614205
Q gi|254780289|r 446 KEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHM 525 (682)
Q Consensus 446 ~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~~~ 525 (682)
T Consensus 8 ~~~~~-~~P~L~rfa~~l~~d~~dAEDlvQetflk~~~~~~~~~~~~~-----~~~WL~~IarN~~id-~~R-------- 72 (182)
T PRK12511 8 FDVID-QLVPLRRYARSLTRDSAEAEDLVHDALVRALERRASFRSGGN-----LRTWLMSILHNAFID-ELR-------- 72 (182)
T ss_pred HHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHHH-HHH--------
T ss_conf 99999-899999999999299999999999999999999886688664-----999999999999999-998--------
Q ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHHHH
Q ss_conf 88989999999998776088999789998709998999999986089875536358899860475623898899899999
Q gi|254780289|r 526 RDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAI 605 (682)
Q Consensus 526 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ 605 (682)
T Consensus 73 --------r~~--------~~--------------------------~~~~~~-~~~---------~~~~~~~~~~e~~~ 100 (182)
T PRK12511 73 --------RRR--------AE--------------------------ARRADE-LVV---------EADASAPAGQEHAV 100 (182)
T ss_pred --------HCC--------CC--------------------------CCCCCC-CCC---------CCCCCCCCCHHHHH
T ss_conf --------433--------44--------------------------343331-012---------35556896356899
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 9999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 606 QANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 606 ~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 101 ~---~~~l~~al~~Lp~~~R~vl~L~~----~egls~~EIAe~Lgis~gTVKsrl~RAr~~LR~ 157 (182)
T PRK12511 101 R---LAQIRDAFFDLPEEQRAALHLVA----IEGLSYQEAANVLGIPIGTLMSRIGRARAALRA 157 (182)
T ss_pred H---HHHHHHHHHCCCHHHHHHEEEEE----ECCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 9---99999999869998950112410----079999999999893999999999999999999