HHsearch alignment for GI: 254780289 and conserved domain: PRK12523
>PRK12523 RNA polymerase sigma factor; Reviewed.
Probab=98.18 E-value=0.00017 Score=54.39 Aligned_cols=155 Identities=14% Similarity=0.134 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEEHHHHHHHHHHHHHHHHHCCCEEECCC
Q ss_conf 68999875557899988752235677788754436799998874385457312010289899999999972287046142
Q gi|254780289|r 444 AKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPV 523 (682)
Q Consensus 444 AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~~f~tya~~~i~~~i~~~~~~~~~~~r~~~ 523 (682)
T Consensus 11 ~~~~Ly~~~~~~L~~~~~r~~~~~e~AEDivQd~Flrl~~~-~~~~~~-----~~~~a~Lf~iarNl~~-D~-------- 75 (172)
T PRK12523 11 LVGALYRDHRGWLLAWLRRNLACRQRAEDLSQDTFVRLLGR-PELPTP-----REPRAFLAAVAKGLMF-DH-------- 75 (172)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHC-CCCCCC-----CCHHHHHHHHHHHHHH-HH--------
T ss_conf 99999999999999999999498868999999999999827-765673-----4599999999999999-99--------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCCCHHHH
Q ss_conf 05889899999999987760889997899987099989999999860898755363588998604756238988998999
Q gi|254780289|r 524 HMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDS 603 (682)
Q Consensus 524 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~d~~~~~~~~~ 603 (682)
T Consensus 76 --------~Rr~~~~~~-------~~~~~~-------------------------------------~~~~~~~~~~e~~ 103 (172)
T PRK12523 76 --------FRRAALEQA-------YLAELA-------------------------------------LVPEAEQPSPEEQ 103 (172)
T ss_pred --------HHHHHHHHH-------HHHHHH-------------------------------------CCCCCCCCCHHHH
T ss_conf --------998998850-------088886-------------------------------------2665468997999
Q ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 999999999999973299889999999818798674688999899667899999999999998329
Q gi|254780289|r 604 AIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 604 ~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 104 ~~~~e~~~~l~~al~~Lp~~~R~v~~L~~----~eGls~~EIA~~LgiS~~tVk~~l~rAl~~~~~ 165 (172)
T PRK12523 104 HLILEDLKAIDRLLGKLSSKARAAFLYNR----LDGMGHAEIAERLGVSVSRVRQYLAQGLRQCYI 165 (172)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999999999998649999999999999----939999999999893999999999999999999