HHsearch alignment for GI: 254780289 and conserved domain: TIGR00721
>TIGR00721 tfx DNA-binding protein, Tfx family; InterPro: IPR004645 This is a family of Tfx DNA-binding proteins, which is restricted to the archaea. Homology among the members is strongest in the helix-turn-helix-containing N-terminal region. Tfx from Methanobacterium thermoautotrophicum is associated with the operon for molybdenum formyl-methanofuran dehydrogenase and binds a DNA sequence near its promoter.; GO: 0003677 DNA binding.
Probab=92.74 E-value=0.2 Score=30.24 Aligned_cols=45 Identities=29% Similarity=0.473 Sum_probs=41.7
Q ss_pred CCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 99889999999818798674688999899667899999999999998329
Q gi|254780289|r 620 LTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 620 l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 7 LTe~Q~kVL~lR-----~kGl~Q~eIAk~LkTtRaNvS~iEkrA~EnIeK 51 (142)
T TIGR00721 7 LTERQIKVLELR-----EKGLKQKEIAKILKTTRANVSIIEKRALENIEK 51 (142)
T ss_pred CHHHHHHHHHHH-----HCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 406568999986-----338887889877267201378988874432377