HHsearch alignment for GI: 254780289 and conserved domain: TIGR02997
>TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family.
Probab=100.00 E-value=0 Score=821.59 Aligned_cols=246 Identities=48% Similarity=0.826 Sum_probs=236.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 32222211268899999987653321124689998755578999887522356777887544367999988743854573
Q gi|254780289|r 415 SISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGY 494 (682)
Q Consensus 415 ~ie~~~gl~i~ElK~i~r~I~~ge~e~~~AK~~l~~anlr~v~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~~~~~~g~ 494 (682)
T Consensus 90 aWA~~a~l~l-eLk~~-------~r~G~RAK~kMi~ANLRLVVSvAKKYq~RglElLDLIQEG~lGL~RAVEKFDPtrGY 161 (336)
T TIGR02997 90 AWAEAAQLEL-ELKLV-------LRQGQRAKEKMIKANLRLVVSVAKKYQNRGLELLDLIQEGTLGLERAVEKFDPTRGY 161 (336)
T ss_pred HHHHHHHHHH-HHHHH-------HHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8899842258-99999-------997899999998760226889999851368833568876343122112335777788
Q ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCC
Q ss_conf 12010289899999999972287046142058898999999999877608899978999870999899999998608987
Q gi|254780289|r 495 KFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPI 574 (682)
Q Consensus 495 ~f~tya~~~i~~~i~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 574 (682)
T Consensus 162 KFSTYAYWWIRQ~ITRAIA~qSRTIRLPiH~~EKLnkiKK~qReL~q~lGR~Ps~~EiAe~lel~~~qvR~~l~~~~~p~ 241 (336)
T TIGR02997 162 KFSTYAYWWIRQGITRAIANQSRTIRLPIHITEKLNKIKKVQRELSQKLGRRPSEAEIAEALELEPEQVRELLQRARQPV 241 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHCCCC
T ss_conf 63301246875688999843688324741076666899899899999838897868999883889889999999707874
Q ss_pred CCCCCC-CCCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCH
Q ss_conf 553635-8899860475623898899899999999999999997329988999999981879867468899989966789
Q gi|254780289|r 575 SLETPI-GDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTR 653 (682)
Q Consensus 575 sl~~~~-~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~ 653 (682)
T Consensus 242 SLd~~VrG~e~dt~LgdLl~d~~~~~P~~~~~~~~l~~dL~~lL~~L~p~e~~VL~LRfGL~~~~~~TL~eiG~~l~lSR 321 (336)
T TIGR02997 242 SLDTRVRGDEEDTELGDLLEDEDGESPEEQVEQESLRQDLESLLAELTPRERQVLRLRFGLDDGEPLTLAEIGERLNLSR 321 (336)
T ss_pred CCCCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCH
T ss_conf 45773268885422654326888998278999999999999988637988999999857899897532789998838836
Q ss_pred HHHHHHHHHHHHHHC
Q ss_conf 999999999999832
Q gi|254780289|r 654 ERIRQIEAKAIRKLK 668 (682)
Q Consensus 654 er~rqi~~~a~~~l~ 668 (682)
T Consensus 322 ERVRQiE~~AL~kLR 336 (336)
T TIGR02997 322 ERVRQIEAKALRKLR 336 (336)
T ss_pred HHHHHHHHHHHHHCC
T ss_conf 888899999975349