HHsearch alignment for GI: 254780289 and conserved domain: pfam00140

>pfam00140 Sigma70_r1_2 Sigma-70 factor, region 1.2.

Probab=98.76  E-value=6.8e-09  Score=89.15  Aligned_cols=35  Identities=51%  Similarity=0.935  Sum_probs=33.1

Q ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             72899999985697688978899999999988999
Q gi|254780289|r  118 DDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAM  152 (682)
Q Consensus       118 dDPVRMYLREMG~V~LLTREgEIeIAKRIE~G~~~  152 (682)
T Consensus         1 ~D~v~~YL~eIg~~pLLt~eEEi~LA~~i~~g~~~   35 (37)
T pfam00140         1 SDSVRLYLREIGRVPLLTAEEEVELARRIEAGDEL   35 (37)
T ss_pred             CCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCHH
T ss_conf             97099999983776789989999999999816373