HHsearch alignment for GI: 254780289 and conserved domain: pfam00196

>pfam00196 GerE Bacterial regulatory proteins, luxR family.
Probab=95.94  E-value=0.028  Score=36.96  Aligned_cols=56  Identities=29%  Similarity=0.474  Sum_probs=49.2

Q ss_pred             HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf             7329988999999981879867468899989966789999999999999832967778756
Q gi|254780289|r  617 LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLR  677 (682)
Q Consensus       617 l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~  677 (682)
T Consensus         1 l~~LT~RE~~il~~l~-----~G~s~~eIA~~L~is~~TV~~h~~~i~~Kl~v~nr~elv~   56 (58)
T pfam00196         1 LDSLSPREREVLRLLA-----AGKSNKEIADILGISEKTVKVHRSNIMRKLNVHSRVELIR   56 (58)
T ss_pred             CCCCCHHHHHHHHHHH-----HCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf             9977999999999998-----0799999999978889999999999999809999999995