HHsearch alignment for GI: 254780289 and conserved domain: pfam00196
>pfam00196 GerE Bacterial regulatory proteins, luxR family.
Probab=95.94 E-value=0.028 Score=36.96 Aligned_cols=56 Identities=29% Similarity=0.474 Sum_probs=49.2
Q ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 7329988999999981879867468899989966789999999999999832967778756
Q gi|254780289|r 617 LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLR 677 (682)
Q Consensus 617 l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~ 677 (682)
T Consensus 1 l~~LT~RE~~il~~l~-----~G~s~~eIA~~L~is~~TV~~h~~~i~~Kl~v~nr~elv~ 56 (58)
T pfam00196 1 LDSLSPREREVLRLLA-----AGKSNKEIADILGISEKTVKVHRSNIMRKLNVHSRVELIR 56 (58)
T ss_pred CCCCCHHHHHHHHHHH-----HCCCHHHHHHHHCCCHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf 9977999999999998-----0799999999978889999999999999809999999995