HHsearch alignment for GI: 254780289 and conserved domain: pfam04297
>pfam04297 UPF0122 Putative helix-turn-helix protein, YlxM / p13 like. Members of this family are predicted to contain a helix-turn-helix motif, for example residues 37-55 in Mycoplasma mycoides p13. Genes encoding family members are often part of operons that encode components of the SRP pathway, and this protein may regulate the expression of an operon related to the SRP pathway.
Probab=95.20 E-value=0.063 Score=34.18 Aligned_cols=47 Identities=19% Similarity=0.368 Sum_probs=41.7
Q ss_pred CCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 299889999999818798674688999899667899999999999998329
Q gi|254780289|r 619 SLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKH 669 (682)
Q Consensus 619 ~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~ 669 (682)
T Consensus 17 LLT~KQ~~~~~lyy----~eDlSL~EIAe~~~iSRQaV~D~ikR~~~~L~~ 63 (101)
T pfam04297 17 LLTDKQKNYFELYY----LDDLSLSEIAEEFNVSRQAVYDNIKRTEKMLES 63 (101)
T ss_pred HCCHHHHHHHHHHH----HCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_conf 76599999999998----763989999988198599999999999999999