HHsearch alignment for GI: 254780289 and conserved domain: pfam08281

>pfam08281 Sigma70_r4_2 Sigma-70, region 4. Region 4 of sigma-70 like sigma-factors are involved in binding to the -35 promoter element via a helix-turn-helix motif.

Probab=96.79  E-value=0.0051  Score=42.78  Aligned_cols=53  Identities=23%  Similarity=0.424  Sum_probs=48.0

Q ss_pred             HHHHHHHHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q ss_conf             999999732998899999998187986746889998996678999999999999983
Q gi|254780289|r  611 ETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL  667 (682)
Q Consensus       611 ~~~~~~l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l  667 (682)
T Consensus         2 ~~l~~ai~~Lp~~~r~~~~l~~----~~~~s~~eIA~~lg~s~~tVk~~l~RA~~~L   54 (54)
T pfam08281         2 EALLRALEELPPRQREVFLLRY----LEGLSYAEIAELLGISEGTVKSRLSRARKKL   54 (54)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHH----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHCC
T ss_conf             8999999859999998968799----8785999999998949999999999999719