HHsearch alignment for GI: 254780289 and conserved domain: smart00421
>smart00421 HTH_LUXR helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon
Probab=95.45 E-value=0.055 Score=34.66 Aligned_cols=56 Identities=34% Similarity=0.520 Sum_probs=48.9
Q ss_pred HHCCCHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 7329988999999981879867468899989966789999999999999832967778756
Q gi|254780289|r 617 LASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLR 677 (682)
Q Consensus 617 l~~l~~re~~v~~~r~g~~~~~~~tl~e~~~~~~~~~er~rqi~~~a~~~l~~~~~~~~l~ 677 (682)
T Consensus 1 l~~LT~rE~~il~~l-----~~G~s~~eIA~~L~is~~TV~~~~~~i~~Kl~v~~r~elv~ 56 (58)
T smart00421 1 LASLTPREREVLRLL-----AEGLTNKEIAERLGISEKTVKTHLSNIMRKLGVRSRTQAVR 56 (58)
T ss_pred CCCCCHHHHHHHHHH-----HHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 976189999999999-----81799999998989789899999999999848999999995