BLAST/PSIBLAST alignment of GI: 254780289 and GI: 15889446 at iteration 1
>gi|15889446|ref|NP_355127.1| RNA polymerase sigma factor RpoD [Agrobacterium tumefaciens str. C58] Length = 684
>gi|20141718|sp|P33452|RPOD_AGRT5 RecName: Full=RNA polymerase sigma factor rpoD; Short=Sigma-A; AltName: Full=Major vegetative sigma factor Length = 684
>gi|15157308|gb|AAK87912.1| RNA polymerase sigma factor RpoD [Agrobacterium tumefaciens str. C58] Length = 684
 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 440/703 (62%), Positives = 530/703 (75%), Gaps = 42/703 (5%)

Query: 1   MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
           M    K N ++++E + + D  + D SDD+ KKMIK A++RGYVT++ELN+ LP +EV+S
Sbjct: 1   MATKVKENEEAENERDGATDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNSVLPSEEVTS 60

Query: 61  EQMEDTVAMLSNMGINVVD-------------GD-DLEDEEGSEDSLDLASSASNSSVFL 106
           EQ+EDT+AMLS+MGINV++             GD D E+ EG E    LA S   +++  
Sbjct: 61  EQIEDTMAMLSDMGINVIEDEDAEEAAPAEDDGDSDNEESEGGE----LAPSG-GTALAT 115

Query: 107 QKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLTFQA 166
            K+K+  DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR  M++ LCESPLTFQA
Sbjct: 116 AKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMISGLCESPLTFQA 174

Query: 167 LIIWRDELNDGTTLLREIIDLEACI-GPESKGGF-FHGTEGHSYQKREDSSQEKERDDVQ 224
           LIIWRDELN+GTTLLREIIDLE    GPE+K    F   E     ++    +EK R  ++
Sbjct: 175 LIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTRR-LR 233

Query: 225 ETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVMCAL 284
              GD E    V  D       PPE  E D+         S  +L+AME +LRP+VM  L
Sbjct: 234 APTGD-EDVTDVGGDG-----LPPEEEEEDDDE-------SNLSLAAMEAELRPQVMETL 280

Query: 285 DEIAEVYRELRSLQDN------AVNGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRIDLL 338
           D IA+ Y++LR LQD       A  G        + K LK++L+  V SLSLNQ+RID L
Sbjct: 281 DTIADTYKKLRKLQDQQVEARLACTGTLSSGQERRYKELKDQLITAVKSLSLNQNRIDSL 340

Query: 339 VEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEWKNF 398
           VEQLYDISKR+M NEG LLRLA+SYG+KRD FLE++ G ELDP+W+    +     WK F
Sbjct: 341 VEQLYDISKRLMQNEGRLLRLAESYGVKRDSFLEQYHGAELDPNWMKSITNLAARGWKEF 400

Query: 399 VACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRLVIS 458
              E ++I +IR EI+++S ETGISI+EFR IVSMV+KGE EA IAKKEMVEANLRLVIS
Sbjct: 401 AREESNTIREIRQEIQNLSTETGISIAEFRRIVSMVQKGEREARIAKKEMVEANLRLVIS 460

Query: 459 VAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQSCT 518
           +AKKYTNRGLQFLDLIQEGNIGLMKA +KF++  GYKFSTYA WW++QAITRSIADQ+ T
Sbjct: 461 IAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQART 520

Query: 519 IRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPISLET 578
           IRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPISLET
Sbjct: 521 IRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPISLET 580

Query: 579 PIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIGMNT 638
           P+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIGMNT
Sbjct: 581 PVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNT 640

Query: 639 DHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
           DHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 641 DHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 683