BLAST/PSIBLAST alignment of GI: 254780289 and GI: 209550278 at iteration 1
>gi|209550278|ref|YP_002282195.1| RNA polymerase sigma factor RpoD [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 685
>gi|209536034|gb|ACI55969.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 685
Score = 822 bits (2123), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/709 (61%), Positives = 526/709 (74%), Gaps = 53/709 (7%)
Query: 1 MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
M K N D++ E + + D + D SDD+ KKMIK A++RGYVT++ELNA LP +EV+S
Sbjct: 1 MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS 60
Query: 61 EQMEDTVAMLSNMGINVVD-----------------GDDLEDEEGSEDSLDLASSASNSS 103
EQ+EDT++MLS+MGINV++ E+ EG E LA S S ++
Sbjct: 61 EQIEDTMSMLSDMGINVIEDEEAEEAGASGGGDDDDAGSDEESEGGE----LAPS-SGTA 115
Query: 104 VFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLT 163
+ K+K+ DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR M+A LCESPLT
Sbjct: 116 LATAKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLT 174
Query: 164 FQALIIWRDELNDGTTLLREIIDLEACI-GPESKGGF-FHGTEGHSYQKREDSSQEKERD 221
FQA+IIWRDELN+GTTLLREIIDLE GPE+K F E ++ +EK R
Sbjct: 175 FQAIIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKTR- 233
Query: 222 DVQETEGDIESAAKVSKDDRSKVDS---PPENAENDERNLDEDEDDSAHTLSAMEDQLRP 278
A+ DD + V PPE E DE S +L+AME +LRP
Sbjct: 234 -----------RARSGDDDITDVGGEGLPPEEEEEDEDE-------SNLSLAAMEAELRP 275
Query: 279 KVMCALDEIAEVYRELRSLQDNAV------NGQKDEKSSVKCKVLKEKLVKLVGSLSLNQ 332
+VM LD IAE Y++LR LQD V +G + K LK++L+K V SLSLNQ
Sbjct: 276 QVMETLDTIAETYKKLRKLQDQQVEQRLSASGTLSSAQERRYKELKDELIKAVKSLSLNQ 335
Query: 333 SRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPE 392
+RID LVEQLYDI+KR++ NEG LLRLA+SYG+KRD FLE++QG ELDP+W+ +
Sbjct: 336 NRIDALVEQLYDINKRLVSNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAA 395
Query: 393 GEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEAN 452
WK F E +I IR EI++++ ETGISISEFR IV MV+KGE EA IAKKEMVEAN
Sbjct: 396 RGWKEFARGENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEAN 455
Query: 453 LRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSI 512
LRLVIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GYKFSTYA WW++QAITRSI
Sbjct: 456 LRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSI 515
Query: 513 ADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKE 572
ADQ+ TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KE
Sbjct: 516 ADQARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKE 575
Query: 573 PISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRF 632
PISLETP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRF
Sbjct: 576 PISLETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRF 635
Query: 633 GIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
GIGMNTDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 636 GIGMNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 684