BLAST/PSIBLAST alignment of GI: 254780289 and GI: 222086540 at iteration 1
>gi|222086540|ref|YP_002545074.1| RNA polymerase sigma factor protein (sigma-70) [Agrobacterium radiobacter K84] Length = 687
>gi|221723988|gb|ACM27144.1| RNA polymerase sigma factor protein (sigma-70) [Agrobacterium radiobacter K84] Length = 687
Score = 821 bits (2121), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 439/706 (62%), Positives = 526/706 (74%), Gaps = 45/706 (6%)
Query: 1 MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
M K N +++ E + + D + D SDD+ KKMIK A++RGYVT++ELNA LP +EV+S
Sbjct: 1 MATKVKENEEAEVERDGTSDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS 60
Query: 61 EQMEDTVAMLSNMGINVVDGDDLEDE-----------------EGSEDSLDLASSASNSS 103
EQ+EDT+AMLS+MGINV++ +D+E+ EG E LA S + S+
Sbjct: 61 EQIEDTMAMLSDMGINVIEDEDVEEAGAATSSDDDDSSDDDNGEGGE----LAPS-TGSA 115
Query: 104 VFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLT 163
+ K+K+ DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR M+ LCESPLT
Sbjct: 116 LATAKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIGGLCESPLT 174
Query: 164 FQALIIWRDELNDGTTLLREIIDLEACI-GPESKGG-FFHGTEGHSYQKREDSSQEKERD 221
FQALIIWRDELN+GTTLLREIIDLE GPE+K F E ++ +EK R
Sbjct: 175 FQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKAAEEKEKARR 234
Query: 222 DVQETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVM 281
+ GD DD + V E +E + DE A AME +LRP+VM
Sbjct: 235 G-RSPSGD---------DDITDVGGEGLPGEEEEEDEDESSLSLA----AMEAELRPQVM 280
Query: 282 CALDEIAEVYRELRSLQDNAV------NGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRI 335
LD IAE Y++LR LQD V +G + K LK++LVK V SLSLNQ+RI
Sbjct: 281 TTLDTIAETYKKLRKLQDQQVEQRLSASGTLSSAQERRYKELKDELVKSVKSLSLNQNRI 340
Query: 336 DLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEW 395
D LVEQLYDI+KR++ NEG LLRLA+SYG+KRD FLE++QG ELDP+W+ + W
Sbjct: 341 DALVEQLYDINKRLVQNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGW 400
Query: 396 KNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRL 455
K F E +I IR EI++++ ETGISISEFR IV MV+KGE EA IAKKEMVEANLRL
Sbjct: 401 KEFAKSENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRL 460
Query: 456 VISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQ 515
VIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GYKFSTYA WW++QAITRSIADQ
Sbjct: 461 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 520
Query: 516 SCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPIS 575
+ TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPIS
Sbjct: 521 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 580
Query: 576 LETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIG 635
LETP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIG
Sbjct: 581 LETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIG 640
Query: 636 MNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
MNTDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 641 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 686