BLAST/PSIBLAST alignment of GI: 254780289 and GI: 241205658 at iteration 1
>gi|241205658|ref|YP_002976754.1| RNA polymerase sigma factor RpoD [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 685
>gi|240859548|gb|ACS57215.1| RNA polymerase, sigma 70 subunit, RpoD subfamily [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 685
 Score =  819 bits (2116), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 439/706 (62%), Positives = 528/706 (74%), Gaps = 47/706 (6%)

Query: 1   MTIGKKRNRDSDSEHEDSDDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSS 60
           M    K N D++ E + + D  + D SDD+ KKMIK A++RGYVT++ELNA LP +EV+S
Sbjct: 1   MATKVKENEDAEVERDGASDGPLLDLSDDAVKKMIKAAKKRGYVTMDELNAVLPSEEVTS 60

Query: 61  EQMEDTVAMLSNMGINVVD-----------------GDDLEDEEGSEDSLDLASSASNSS 103
           EQ+EDT++MLS+MGINV++                     E+ EG E    LA S S ++
Sbjct: 61  EQIEDTMSMLSDMGINVIEDEEAEEAGASGSSDDDDAGSDEESEGGE----LAPS-SGTA 115

Query: 104 VFLQKRKDSADRSTDDPVRMYLREMGSIELLSREGEIAIAKRIEAGRAMMMASLCESPLT 163
           +   K+K+  DR TDDPVRMYLREMGS+ELLSREGEIAIAKRIEAGR  M+A LCESPLT
Sbjct: 116 LAAAKKKEPTDR-TDDPVRMYLREMGSVELLSREGEIAIAKRIEAGRETMIAGLCESPLT 174

Query: 164 FQALIIWRDELNDGTTLLREIIDLEACI-GPESKGG-FFHGTEGHSYQKREDSSQEKERD 221
           FQALIIWRDELN+GTTLLREIIDLE    GPE+K    F   E     ++    +EK R 
Sbjct: 175 FQALIIWRDELNEGTTLLREIIDLETTYSGPEAKAAPQFQSPEKIEADRKLAEEKEKTR- 233

Query: 222 DVQETEGDIESAAKVSKDDRSKVDSPPENAENDERNLDEDEDDSAHTLSAMEDQLRPKVM 281
                       A+   DD + V      AE +E +    ED+S  +L+AME +LRP+VM
Sbjct: 234 -----------RARSGDDDITDVGGEGLPAEEEEED----EDESNLSLAAMEAELRPQVM 278

Query: 282 CALDEIAEVYRELRSLQDNAV------NGQKDEKSSVKCKVLKEKLVKLVGSLSLNQSRI 335
             LD IAE Y++LR LQD  V      +G        + K LK++L+K V SLSLNQ+RI
Sbjct: 279 ETLDTIAETYKKLRKLQDQQVEQRLSASGTLSTAQERRYKELKDELIKAVKSLSLNQNRI 338

Query: 336 DLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERHQGRELDPHWVSYAKDFPEGEW 395
           D LVEQLYDI+KR++ NEG LLRLA+SYG+KRD FLE++QG ELDP+W+    +     W
Sbjct: 339 DALVEQLYDINKRLVSNEGRLLRLAESYGVKRDSFLEQYQGAELDPNWMKSIGNLAARGW 398

Query: 396 KNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMVRKGECEASIAKKEMVEANLRL 455
           K F   E  +I  IR EI++++ ETGISISEFR IV MV+KGE EA IAKKEMVEANLRL
Sbjct: 399 KEFARGENTTIRDIRQEIQNLATETGISISEFRRIVHMVQKGEREARIAKKEMVEANLRL 458

Query: 456 VISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWWVKQAITRSIADQ 515
           VIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++  GYKFSTYA WW++QAITRSIADQ
Sbjct: 459 VISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQ 518

Query: 516 SCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGVRKVLKITKEPIS 575
           + TIRIPVHM + I+K+VRT+R+M ++I REPTPEE+A+KLAMP+E VRKVLKI KEPIS
Sbjct: 519 ARTIRIPVHMIETINKIVRTSRQMLHEIGREPTPEELAEKLAMPLEKVRKVLKIAKEPIS 578

Query: 576 LETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPREERVLRMRFGIG 635
           LETP+GDE+ SHLGDFIEDKNA+ P+D+AIQANLRETTTRVLASLTPREERVLRMRFGIG
Sbjct: 579 LETPVGDEEDSHLGDFIEDKNALLPIDAAIQANLRETTTRVLASLTPREERVLRMRFGIG 638

Query: 636 MNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681
           MNTDHTLEEVG+QF VTRERIRQIEAKA+RKLKHPSRS+KLRSFLD
Sbjct: 639 MNTDHTLEEVGQQFSVTRERIRQIEAKALRKLKHPSRSRKLRSFLD 684