RPSBLAST alignment for GI: 254780289 and conserved domain: TIGR02885

>gnl|CDD|131931 TIGR02885, spore_sigF, RNA polymerase sigma-F factor. Members of this protein family are the RNA polymerase sigma factor F. Sigma-F is specifically and universally a component of the Firmicutes lineage endospore formation program, and is expressed in the forespore to turn on expression of dozens of genes. It is closely homologous to sigma-G, which is also expressed in the forespore. Length = 231

 Score = 96.3 bits (240), Expect = 2e-20
 Identities = 71/241 (29%), Positives = 125/241 (51%), Gaps = 15/241 (6%)

Query: 430 IVSMVRKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFD 489
           ++ + + G+ EA   + +++E NLRLV S+ K++ NRG +  DL Q G IGL+KA +KFD
Sbjct: 1   LIKLAQNGDKEA---RDKLIECNLRLVWSIVKRFLNRGYEPEDLFQIGCIGLVKAIDKFD 57

Query: 490 WCLGYKFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTP 549
                KFSTYA+  +   I R + D    I++   +++   K+      +S ++ REPT 
Sbjct: 58  LSYDVKFSTYAVPMIMGEIKRFLRDDG-IIKVSRSLKELARKIRYMKEELSKELGREPTI 116

Query: 550 EEIAKKLAMPVEGVRKVLKITKEPISLETPI--GDEDTSHLGDFIEDKNAVSPLDSAIQA 607
            E+A+ L +  E +   L+  + P SL   +   D D  +L D I DK +    DS    
Sbjct: 117 NELAEALGVSPEEIVMALESARSPQSLYDTVHQDDGDPIYLLDQIADKGSE---DSDWLE 173

Query: 608 NLRETTTRVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKL 667
            +       ++ L  RE +++ +R+      D T  EV     +++ ++ ++E K ++K+
Sbjct: 174 KI--ALKEAISKLDERERQIIMLRY----FKDKTQTEVANMLGISQVQVSRLEKKVLKKM 227

Query: 668 K 668
           K
Sbjct: 228 K 228