>gnl|CDD|162836 TIGR02393, RpoD_Cterm, RNA polymerase sigma factor RpoD, C-terminal domain. This model represents the well-conserved C-terminal region of the major, essential sigma factor of most bacteria. Members of this clade show considerable variability in domain architecture and molecular weight, as well as in nomenclature: RpoD in E. coli and other Proteobacteria, SigA in Bacillus subtilis and many other Gram-positive bacteria, HrdB in Streptomyces, MysA in Mycobacterium smegmatis, etc. Length = 238

Score = 388 bits (998), Expect = e-108 Identities = 157/238 (65%), Positives = 197/238 (82%) Query: 444 AKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGYKFSTYAMWW 503 AKK++VE+NLRLV+S+AKKYTNRGL FLDLIQEGNIGLMKA EKFD+ GYKFSTYA WW Sbjct: 1 AKKQLVESNLRLVVSIAKKYTNRGLSFLDLIQEGNIGLMKAVEKFDYRKGYKFSTYATWW 60 Query: 504 VKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAKKLAMPVEGV 563 ++QAITR+IADQ+ TIRIPVHM + I+K+++ R+++ ++ REPT EE+A+++ MP E V Sbjct: 61 IRQAITRAIADQARTIRIPVHMVETINKLIKAERQLTQELGREPTDEELAERMGMPAEKV 120 Query: 564 RKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTTRVLASLTPR 623 R++ KI +EPISLETPIG+E+ S LGDFIED + SP D A + LRE VL +LT R Sbjct: 121 REIKKIAQEPISLETPIGEEEDSFLGDFIEDTSIESPDDYAAKELLREQLDEVLETLTER 180 Query: 624 EERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSKKLRSFLD 681 E +VLRMR+G+ HTLEEVGK+F VTRERIRQIE+KA+RKL+HPSRSKKL+SFLD Sbjct: 181 ERKVLRMRYGLLDGRPHTLEEVGKEFNVTRERIRQIESKALRKLRHPSRSKKLKSFLD 238

RPSBLAST alignment for GI: 254780289 and conserved domain: TIGR02393