RPSBLAST alignment for GI: 254780289 and conserved domain: PRK05658
>gnl|CDD|180186 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated. Length = 619
Score = 931 bits (2410), Expect = 0.0
Identities = 345/667 (51%), Positives = 435/667 (65%), Gaps = 53/667 (7%)
Query: 19 DDSLVFDFSDDSWKKMIKLARQRGYVTIEELNAFLPPDEVSSEQMEDTVAMLSNMGINVV 78
DS + D KK+IK ++RGY+T ELN LP D V SEQ+ED +AML++MGI VV
Sbjct: 1 GDSPMLDNPQSQLKKLIKRGKERGYLTYAELNDHLPEDIVDSEQIEDIIAMLNDMGIQVV 60
Query: 79 ----DGDDLEDEEGSEDSLDLASSASNSSVFLQKRKDSADRSTDDPVRMYLREMGSIELL 134
D DDL E D+ + ++ L + R TDDPVRMYLREMG++ELL
Sbjct: 61 EEAPDADDLLLAENEADAQTDEDAEEEAAAALSSVESEIGR-TDDPVRMYLREMGTVELL 119
Query: 135 SREGEIAIAKRIEAGRAMMMASLCESPLTFQALIIWRDELNDGTTLLREIIDLEACIGPE 194
+REGEI IAKRIEAG +M+A+LCESPLT A++ W D L +G LRE+ID P
Sbjct: 120 TREGEIEIAKRIEAGENIMIAALCESPLTIDAILEWYDRLENGERRLRELIDGFV--DPN 177
Query: 195 SKGGFFHGTEGHSYQKREDSSQEKERDDVQETEGDIESAAKVSKDDRSKVDSPPENAEND 254
++ H + + + D
Sbjct: 178 AEEDPAHVGS----------------------------------------ELEELDDDED 197
Query: 255 ERNLDEDEDDSAHTLSAMEDQLRPKVMCALDEIAEVYRELRSLQDNAVNGQKDEKSSVKC 314
E +E+ED++ +L+A E +L KV+ +A+ Y++LR Q+ V G+ K
Sbjct: 198 E---EEEEDENDDSLAADESELPEKVLEKFKALAKQYKKLRKAQEKKVEGR--LAQHKKY 252
Query: 315 KVLKEKLVKLVGSLSLNQSRIDLLVEQLYDISKRIMHNEGELLRLAQSYGIKRDVFLERH 374
L+EKL + + SL L +ID LVEQL DI+KR+ E ELLRL + + R FL+
Sbjct: 253 AKLREKLKEELKSLRLTSKQIDELVEQLRDINKRVRGQERELLRLVERLKMPRKDFLKLF 312
Query: 375 QGRELDPHWVSYAKDFPEGEWKNFVACEVDSILKIRNEIKSISVETGISISEFRHIVSMV 434
QG ELD W+ W F+ D I K++ E+++I ETG++I E + I +
Sbjct: 313 QGNELDITWLEKE-IASGKPWSEFLVRVYDEIKKLQQELEAIEEETGLTIEELKEINRQI 371
Query: 435 RKGECEASIAKKEMVEANLRLVISVAKKYTNRGLQFLDLIQEGNIGLMKAAEKFDWCLGY 494
KGE +A AKKEMVEANLRLVIS+AKKYTNRGLQFLDLIQEGNIGLMKA +KF++ GY
Sbjct: 372 SKGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 431
Query: 495 KFSTYAMWWVKQAITRSIADQSCTIRIPVHMRDKIHKVVRTARRMSNKIKREPTPEEIAK 554
KFSTYA WW++QAITRSIADQ+ TIRIPVHM + I+K+ R +R+M +I REPTPEE+A+
Sbjct: 432 KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQMLQEIGREPTPEELAE 491
Query: 555 KLAMPVEGVRKVLKITKEPISLETPIGDEDTSHLGDFIEDKNAVSPLDSAIQANLRETTT 614
+L MP + VRKVLKI KEPISLETPIGD++ SHLGDFIEDKNA P+D+AIQ +LRE TT
Sbjct: 492 RLGMPEDKVRKVLKIAKEPISLETPIGDDEDSHLGDFIEDKNAELPIDAAIQESLREATT 551
Query: 615 RVLASLTPREERVLRMRFGIGMNTDHTLEEVGKQFCVTRERIRQIEAKAIRKLKHPSRSK 674
VLASLTPRE +VLRMRFGI MNTDHTLEEVGKQF VTRERIRQIEAKA+RKL+HPSRS+
Sbjct: 552 DVLASLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSR 611
Query: 675 KLRSFLD 681
KLRSFLD
Sbjct: 612 KLRSFLD 618